RNA id: TU182288


Basic Information

Item Value
RNA id TU182288
length 1747
lncRNA type inter_gene
GC content 0.47
exon number 7
gene id LOC103026004
representative True

Chromosome Information

Item Value
chromosome id NC_035911.1
NCBI id CM008314.1
chromosome length 35718434
location 25284443 ~ 25303167 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CGAGTAGTCGCACGGCGCTGAAATACAAGATGAGAAAATTGCCTGGAATAGGTGTGGCATCATATACTCCCATCCCTTGACATCAGAACTGTAGCCTTTTTGGAGTCAAACATCCTTACTCTCTGGTTCCTGAGTTTATGCAGTGAGTCACCTGCATGCCAAGGCTGGGCGTTGACTGAACTTCAAAATCCCAATCAATCCAAGCTTCAGTCAAGGAGAACAGCCTTGGACATGTACAAAGCACAAGACAGTAAAACTCAGGGACTCAAATGAACCCTACACTAAAAAAGACCAGCTCCATAAGCAGACACCATGCCTGGATCTCCAGCCTGGCCTGCCTCTCCTACTCTGATCTTGAAAGGACTTCCAGGGATGTGGGAGCCATTAAACTTCACATCGATCAGGGCCCGGATGCGGTATGGAGAGTAAGGGATTTCATCTCCGCCATACTTAATCAGGATGGTGTAGCGCCCTGTCATGTCTGGCACATAGGACACCAATAATCTGGACAGCCAGAAGTCCTTCTCCTGCATCTTTGGCATCAATTGTGAACTCCACAGGCAGACTGGCAGGCACACCAGTGGTATTAAGCCCAGGGCCACTGGCACGCACCTTACTGGCATCATGAGTGGGCAGAACCTTTACCTTATAAGGACTAAAACCAGAGTGGAGACAGGGGACAGAAAGGAGTGATGAGTATAAGACAATTTACATTTCATAGAATTGGTTTGAAGATTATCGGTTTCTATGATTTTCTTCAAATGGCAGCCATTAAGAGCTTAGGGAAGAGCACGAAGGCAGACACCACGTCTTTATAGAGCTGCTGTTTATGCTACATCAGTCTGTTTAAAAATTAGAGCTTACTGCCATGTCACCCTCTATCCCATTAAGCTACCCATTCATTTCCAGGATCTTCAATAAAGAGCACTTAACAGTCACACACCTGCGTGGAATTTCCTCATCAGCGTACAGTACATTAATGGAATATGGTCCCTCTCTGGTTGGTACGTAGCTCACTGTGTGGGTCTGATCTCCATTATCAACCACTTCAGCTGGTTCCACAACCTTTGGGTCCCTGCACTCTGACCTGCAGAGGAGCCATGCCTGCTTTGCTGGCATCCACAGTGAACACCTGTGGGATATTAGCCCGAACATTTGTCCCGATACCCTGTCCCTGGCACTTAACCTTGGTAGGATCAACTGTATCCTGGACTGGCACAGAGAAGGGGCTTCCTGTAGGAGAAGACAAAGCAAAATataattatgcattatgaaaattaataaagagaggaaaaaaaaattcaaaaataataaaataaacactaaccAGTAATTGGTTGGCCTCCATAAGTGATATTGAGGTTGTAAGTCCCTGGCTCATATGGTATGTACTCTACAGAGCAGCTGCCGTCTTTATTATCAGTGCAGGACATCTTGGCCTCGGAGGGTCCTTCCATAGCCAAGCCCAATCCTCCTGTACCCGCCCCACTTTAGAGACAAGGAGACGAGAGTCAAAGATCAGACAAGGAGAGGTAAAAAACTATGGCTGATAAATGTAGCTGATCAATGGCTTTACTACTGACCGGGTCTCCACAGTGAATTTGTTGGGTTTGTTGGTGAGGCCAGCCTTCAGTCCTGGGCCGTGCACTCGGACACGTGCAGGGTCACAGCCTTCAGTCACCGGCACACGGAAGGGACTGTTGGGCACTGGGGAATCATCGTAGGCAACCTCCACGCTGTGCGGACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU182266 lncRNA downstream 92654 25190964 ~ 25191789 (-) True G134748
TU181982 lncRNA downstream 261980 25022232 ~ 25022463 (-) True G134535
TU181964 lncRNA downstream 454559 24829305 ~ 24829884 (-) True G134520
TU181960 lncRNA downstream 463854 24817171 ~ 24820589 (-) True G134516
TU181935 lncRNA downstream 610654 24672405 ~ 24673789 (-) True G134500
TU182301 lncRNA upstream 127720 25429212 ~ 25429657 (-) True G134775
TU182305 lncRNA upstream 154059 25455551 ~ 25461401 (-) True G134779
TU182307 lncRNA upstream 154059 25455551 ~ 25461401 (-) False G134779
TU182398 lncRNA upstream 434106 25735598 ~ 25736781 (-) True G134847
XR_002650844.1 lncRNA upstream 462156 25763648 ~ 25764512 (-) True LOC111194024
XM_007249898.3 mRNA downstream 63097 25218189 ~ 25221346 (-) True rpl10
XM_007249895.3 mRNA downstream 87005 25189737 ~ 25197438 (-) True LOC103029485
XM_007249902.3 mRNA downstream 186261 25054099 ~ 25098182 (-) True dnah12
XM_022677399.1 mRNA downstream 186263 25054099 ~ 25098180 (-) False dnah12
XM_022677398.1 mRNA downstream 231401 25044450 ~ 25053042 (-) False LOC103031928
XM_007250010.3 mRNA upstream 5019 25306511 ~ 25311812 (-) True LOC103036367
XM_015605979.2 mRNA upstream 5019 25306511 ~ 25311337 (-) False LOC103036367
XM_022677403.1 mRNA upstream 10418 25311910 ~ 25318162 (-) True haus7
XM_007249875.3 mRNA upstream 10418 25311910 ~ 25317381 (-) False haus7
XM_022677413.1 mRNA upstream 19283 25320775 ~ 25406744 (-) True atp2b3
trnah-gug_15 other downstream 473941 24810431 ~ 24810502 (-) True trnah-gug_15
TU181951 other downstream 475228 24806934 ~ 24809215 (-) False ebp
trnaf-gaa_3 other downstream 478800 24805571 ~ 24805643 (-) True trnaf-gaa_3
TU181775 other downstream 798715 24483977 ~ 24485728 (-) False trpc4ap
TU181779 other downstream 850974 24431159 ~ 24433469 (-) True LOC111194023
TU182421 other upstream 490395 25791887 ~ 25798373 (-) True G134867
XR_002650928.1 other upstream 503186 25804678 ~ 25805810 (-) False taf13
XR_002650929.1 other upstream 503191 25804683 ~ 25805806 (-) False taf13
TU182548 other upstream 685699 25987191 ~ 26004934 (-) True G134931
TU182776 other upstream 1278684 26580176 ~ 26581742 (-) True G135102

Expression Profile