RNA id: XM_007250010.3


Basic Information

Item Value
RNA id XM_007250010.3
length 2006
RNA type mRNA
GC content 0.37
exon number 4
gene id LOC103036367
representative True

Chromosome Information

Item Value
chromosome id NC_035911.1
NCBI id CM008314.1
chromosome length 35718434
location 25306511 ~ 25311812 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

acaaaaaaaaacattcaaatatggctgttttacttaatatacaaaacaaaaattatcTTCTGTTTATATCTAATGATGATTGTACAATCAACAGACTATTTGGGGAAATAATGATGAGCCCAAATCTGACATGCCACATATCATaagacaggaactagtattgtccCCCAAGAACACTGCACAGACTTAAACTGTAAACTCTATAAAAATTTGTTAAATTTCCCTTTAGCCTTAATTGTTCTACGGTAGAGAATAAGATAGAAACTGAGTCTGAGTACAAGTATGGTTGTCTGCCACTCTCTCAGCCTCCACATATTTGTCTTTGTAAGTTGGTGTGATGGGAGGGACCACTTCCCAAAGTAAAGATGTAATGCTAACTTTACCCAAGAACTGGAGAGATAGTCATTGGGTAGCTTGACTGGTTTTAAGGTGGTTAGTAGGTGAAGTTAACTTTGTAACAGTTCTCATTAATTATTAGCTGAATCGCTGCAGTATGGAGGGAGAAAAGCAAAAGTCTAAAGAAGAAGACTTTCCTTTTAACAAACCAGGGGATAAAGAGTCTCAGGGTCAGACAGGCAAGGCCCACTGGCACATGGATATGAACCACTATGCCACTAAGAAGAGTGCAGTTCAGAGCATGCTGGATGTAGCCCTGCTCATGGCTAACTCCTCCCAGCTGAAGACTGTACTGTATGAAGGGCCTGAATACAGGTTCTACATCCCTCTCATCACACTCATCACTCTCTCCATCACACTCCAGGTCATTGTTGGTCTACTTCTCATATTCATTGtcAAATATAATCTGAACGACATGAGGAAACAGCCTAAACTCAACATGATGAACAATGTCACCACAGTCCTTGTCTTCTTTATTGTTCTCATCAATGTCTTCATTACTGCTTTGGGATTTGACTCGGCTCGGACTAATGTGACGGTCCCTGCAGTTCTTTCTCAGACTGACTTTACTGGAGATGATTAATTTCCATTCAGACTATACACAGTGAAGTGCCCACTGCCAACGCTCATCTGTTTTATTCAGACTCAGATTTTGATCCCACTCAAAATTATTCTATTGTGTGGCTTTTGCGCAACAAGcctatttataatacatttacaagCATTTTACACTTGGACTTTTTTTGTCCAGTTAAATCAGATTCTAGTTTCAcccttaatgtgatttatttgagcaggtgtgaatacagtaatcACAATCAGATGTGGACAACTGCAGTCTTTTTAAAAGATGGTGGTCTTTGTCTTGTTCTAATGAACAAATTAGCTGTTCATTTGTGGTGAGATTGTGATCTGAACCAACTATCAGGTGTACTCCACAAGTCTGAGATAAATGGCTCCGGTAGACGATTGTGCTTAGCATTATGGGATTCAGCAGAGCAAGTGAGCAGAGAATTGGCTAAATTTGAGCAACTAACCATGTAAAATTGCACTGAAATCTGCACTAGTCAAGAACATAGGACcatctttctgtatttactttctttctcaaaCCAAGAGGTTTGGCCAATAAGAAGAGTAAATGTTTtcacatggtttgttgtgaCTAATTTTATTGCACATGATTGCACAGATTTTTTCCCACTCtatgaaaacaaagaaaaacattagtAAAATGCTCGATGATTTctactttatttattgattCGGATTAGAGCAAACACACCATAGTTGTGAAAATGCTCTAAAACATCAAGGACTGGTTTTCCAAACAGGGATTAAGCATAGTCCTGGACTACAGAAGATTTTTAATAGTGATTCTTCACTGAAAATAACAAGTCTTAAACCTTGACTGGAAAACCAACCCAAAGTGTTAAGTCAACCCACAGGCGTTAAGTCTAACCTAACTAATATAGTCTAAAACTATATTTTCTGTACTATTGAATTTCCTTTCAGTATGCTGTGCAGTTGTGGACTAGTTCTGATCAGAGAAACCACTCCAAATATGCTTTggtttttgtatgtttaaataaacttaaaaacaaaaagtt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002650926.1 lncRNA downstream 3344 25294329 ~ 25303167 (-) False LOC103026004
XR_454811.2 lncRNA downstream 4012 25294303 ~ 25302499 (-) False LOC103026004
TU182288 lncRNA downstream 5019 25284443 ~ 25301492 (-) True LOC103026004
XR_002650927.1 lncRNA downstream 5063 25294329 ~ 25301448 (-) False LOC103026004
TU182266 lncRNA downstream 114722 25190964 ~ 25191789 (-) True G134748
TU182301 lncRNA upstream 117400 25429212 ~ 25429657 (-) True G134775
TU182305 lncRNA upstream 143739 25455551 ~ 25461401 (-) True G134779
TU182307 lncRNA upstream 143739 25455551 ~ 25461401 (-) False G134779
TU182398 lncRNA upstream 423786 25735598 ~ 25736781 (-) True G134847
XR_002650844.1 lncRNA upstream 451836 25763648 ~ 25764512 (-) True LOC111194024
XM_007249898.3 mRNA downstream 85165 25218189 ~ 25221346 (-) True rpl10
XM_007249895.3 mRNA downstream 109073 25189737 ~ 25197438 (-) True LOC103029485
XM_007249902.3 mRNA downstream 208329 25054099 ~ 25098182 (-) True dnah12
XM_022677399.1 mRNA downstream 208331 25054099 ~ 25098180 (-) False dnah12
XM_022677398.1 mRNA downstream 253469 25044450 ~ 25053042 (-) False LOC103031928
XM_022677403.1 mRNA upstream 98 25311910 ~ 25318162 (-) True haus7
XM_007249875.3 mRNA upstream 98 25311910 ~ 25317381 (-) False haus7
XM_022677413.1 mRNA upstream 8963 25320775 ~ 25406744 (-) True atp2b3
XM_022677409.1 mRNA upstream 8963 25320775 ~ 25406743 (-) False atp2b3
XM_022677408.1 mRNA upstream 8963 25320775 ~ 25406743 (-) False atp2b3
trnah-gug_15 other downstream 496009 24810431 ~ 24810502 (-) True trnah-gug_15
TU181951 other downstream 497296 24806934 ~ 24809215 (-) False ebp
trnaf-gaa_3 other downstream 500868 24805571 ~ 24805643 (-) True trnaf-gaa_3
TU181775 other downstream 820783 24483977 ~ 24485728 (-) False trpc4ap
TU181779 other downstream 873042 24431159 ~ 24433469 (-) True LOC111194023
TU182421 other upstream 480075 25791887 ~ 25798373 (-) True G134867
XR_002650928.1 other upstream 492866 25804678 ~ 25805810 (-) False taf13
XR_002650929.1 other upstream 492871 25804683 ~ 25805806 (-) False taf13
TU182548 other upstream 675379 25987191 ~ 26004934 (-) True G134931
TU182776 other upstream 1268364 26580176 ~ 26581742 (-) True G135102

Expression Profile