RNA id: XR_002650924.1


Basic Information

Item Value
RNA id XR_002650924.1
length 1735
RNA type misc_RNA
GC content 0.35
exon number 7
gene id LOC103034468
representative False

Chromosome Information

Item Value
chromosome id NC_035911.1
NCBI id CM008314.1
chromosome length 35718434
location 22909821 ~ 22916384 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TACTTTGAAAGTGTGATATTGGGCGGTCACTGCTGAGGCTTGTGGCTGTTTTCAGGCTCGAGCTAGCTAACCGCCGATCACAGTCcacgacaaaaaaaaactctgAGACCAGAGTACACCTTGAAAGTGCAACAATGCAGACCATTAAATGTGTAGTAGTTGGGGATGGTGCTGTGGGTAAAACCTGCCTTTTGATTTCATATACGACAAACAAGTTCCCATCAGAGTATGTACCAACAgttTTTGATAACTATGCCGTAACTGTAATGATTGGGGGTGAACCATACACTCTTGGATTATTTGACACTGCAGgccaggAGGATTATGATCGGTTGAGGCCTCTGAGCTACCCCCAAACTGATGTCTTCTTAGTTTGTTTCTCAGTAGTTTCACCCTCATCCTTTGAAAATGTCAAGGAAAAATGGGTGCCTGAGATCACCCACCACTGTCCAAAGACCCCGTTCCTGTTGGTCGGAACTCAGATTGACTTGAGAGACGATCCTTCTACTATTGAAAAGCTTGCAAAGAACAAGCAGAAACCCATCACTCCTGAAACAGCAGAGAAACTAGCGAGAGACTTGAAAGCAGTCAAATATGTGGAATGTTCAGCTTTAACACAGAAAGGGCTGAAGAACGTATTTGATGAGGCCATACTAGCTGCCTTGGAGCCCCCAGAGCCTAAGAAGAAACgtaaatgtgttcttttatgAGTTCAGCCTTTATGTAGGTCCTTTCAGGCATAAACATATAACATAAGATCTATGACTATTTTCCATAAGCATAAGAAtcttggttagttttggttgtACCTTAAACCTTTATCAGGAAAGGACTAACTattgcaaatacttttttttttgttgttttgttttttcttcatatttgcCTTGATATATTGTCATCTGAATTAAGAAGAATGGATATGTGTAATGAGTGTAAAATGAGTGTAAGATAtattattttgcaaaaaaaaaagtgtatcttAAGATTATCTTGATTTGTCAAATTGTGTCATGATTGTACTCTTCTCACATGAAAGTGATTCACTGCAAGCCTTCCTTACAGCTAAAGATCGCTTTtgaatttagttatttattgatGGTTAATATTCATTTCTGGGATGGCTGCAATaaggatggaaaaaaaaaaacagtgttatgcTTCAGCACAGAGAACGTGTTGGCAGTAGTTCTTAGTTAAGTGGCAGATCACtttttacattgtgaaaTCATGCCTCTGAActctatttattataaaattcttattataaaacaaattgaTCCAAACATCTTTATGgtaaaattacaaatttattAAATTGACCTCACCTTGCACAAATATCACTCATGTGTAAATCATGATAACTACaataatgttcagttttacttGGACCTGATGTTGATCAGGTCATGTTTTCAGTTAAAGATCATTCtgagtttatatttttctttctttttggatCAGTCAGTTTTGAGTAATAATCtttaataatttctttttttatttatactaatTGTCATTAGCCTTTGTATAATTATAATTGAGtttataatgataatgatgtgtGACGGTGATTCTTTAGCATTCAGCCACTCAAATACAGcatgtgtattgtttttgtttgagtttatttttctttatttctttttaatatatttttatatggactGTTTCGTTACAGAAAGAAATGATTACATGTGTGAATCGCATTGAAATAAACATTTCCAACATTTTG

Function

GO:

id name namespace
GO:0042074 cell migration involved in gastrulation biological_process
GO:0008152 metabolic process biological_process
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0007049 cell cycle biological_process
GO:0051301 cell division biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0016020 membrane cellular_component
GO:0005525 GTP binding molecular_function
GO:0016787 hydrolase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU181095 lncRNA downstream 60460 22848763 ~ 22849361 (-) True G133905
TU181093 lncRNA downstream 100660 22805403 ~ 22809161 (-) True G133903
TU181065 lncRNA downstream 176713 22731557 ~ 22733108 (-) True G133881
TU181217 lncRNA upstream 93409 23009793 ~ 23011658 (-) True G133982
TU181251 lncRNA upstream 339714 23256098 ~ 23257192 (-) False G134015
TU181257 lncRNA upstream 340214 23256598 ~ 23257074 (-) True G134015
TU181269 lncRNA upstream 533860 23450244 ~ 23450532 (-) True G134023
TU181278 lncRNA upstream 541074 23457458 ~ 23457695 (-) True G134026
XM_022677351.1 mRNA downstream 8189 22896950 ~ 22901632 (-) False LOC103038244
XM_022677350.1 mRNA downstream 11563 22896197 ~ 22898258 (-) False LOC103038244
XM_022677349.1 mRNA downstream 19754 22859673 ~ 22890067 (-) True LOC103038563
XM_007250789.3 mRNA downstream 61910 22839397 ~ 22847911 (-) True LOC103040235
XM_007250788.3 mRNA downstream 72091 22809311 ~ 22837730 (-) True LOC103039708
XM_022677354.1 mRNA upstream 1031 22917415 ~ 22933884 (-) False LOC103037932
XM_022677355.1 mRNA upstream 1031 22917415 ~ 22933788 (-) False LOC103037932
XM_022677353.1 mRNA upstream 1031 22917415 ~ 22932423 (-) True LOC103037932
XM_007250004.3 mRNA upstream 22104 22938488 ~ 23003135 (-) True LOC103033828
XM_015605971.2 mRNA upstream 22104 22938488 ~ 23002599 (-) False LOC103033828
XR_002650923.1 other downstream 11563 22890646 ~ 22898258 (-) True LOC103038244
TU181092 other downstream 61922 22839406 ~ 22847899 (-) False LOC103040235
XR_453236.3 other downstream 3597777 19206943 ~ 19312044 (-) False LOC103040989
TU180030 other downstream 3920824 18978917 ~ 18988997 (-) False G133109
XR_002650908.1 other downstream 3925156 18983017 ~ 18984665 (-) True LOC111194102
TU181382 other upstream 707897 23624281 ~ 23631155 (-) True G134093
TU181672 other upstream 1356360 24272744 ~ 24273069 (-) True G134312
TU181779 other upstream 1514775 24431159 ~ 24433469 (-) True LOC111194023
TU181775 other upstream 1567593 24483977 ~ 24485728 (-) False trpc4ap
trnaf-gaa_3 other upstream 1889187 24805571 ~ 24805643 (-) True trnaf-gaa_3

Expression Profile