RNA id: XM_022681875.1


Basic Information

Item Value
RNA id XM_022681875.1
length 4456
RNA type mRNA
GC content 0.46
exon number 16
gene id ppp4r3b
representative True

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 11582838 ~ 11594672 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CACCAGATCGGATTACAAGATGGCGGTCGGTGGGTGAGAGAATACGGCCGCTGGAGATCAAACTGGTCTGGGGGTTGTTTTTAGTGAGCGGAGTGCTGGTAAATGAGGAGCGGGAGATCTTCGGGCTGGTAGAGAGTGGAGAAGTGCGTTTCTGAGCTCGTGTGGGGGAACATGCGGTTAGTAACAGAGTTTAAAGCCCGGGGTTGAGGAAAAAACAGCGGAGAAAACAACAGCGGCGGCGGCGTTCACGGAGCCGATTCACCGAGACCGACCATGTCGGACACCAGGCGGCGGGTTAAAGTTTACACGCTCAACGAAGACCGACAGTGGGACGACAGAGGGACCGGGCACGTCTCCTCTACTTATGTGGAGAGACTGAAGGGAATATCGCTGCTGGTTCGGGCTGAATCCGACGgctcaCTTTTGTTGGAGTCCAAAATCAGTCCAAATACAGCATATCAAAAGCAACAAGATACACTCATCGTTTGGTCCGAAGCAGAAAATTATGATCTTGCCCTAAGTTTCCAGGAAAAGGCAGGTTGTGATGAAATCTGGGAGAAGATCTGTCAGGTGCAGGGTAAAGATCCATCCCTGGAGATCACTCAGGACCCCATCGATGAATCTGAGGAAGAACGCTTCGAGGAGATGCCAGAGACCAGCCACTTGGTGGAGCTGCCCGCCTGCGAGCTGGCTCGTCTGGAGGAAATAGCTGACCTAGTAACCTCTGTGCTCTCCTCGCCCATCCGACGGGAGAAGCTGGCGCTGGCACTCATGAGCGAAGGCTATATCAAAAAGCTCCTGCAGCTTTTTAGGACGTGCGAAGACCAGGACAACCGGGAAGGTCTGCACCATCTTTATGAAATAGTGCGTGGTGTGCTCTTCCTCAATAAGGCCACCTTGTTCGAGGTCATGTTCTCTGATGACTGCATCATGGACGTTGTTGGCTGCCTGGAGTACGACCCGGCACTGGTTCAGCCCAAGAGGCACCGGGAGTTCCTCACCAAGACAGCCAAATTTAAAGAGGTCATCCCCATCACAGACTCAGAACTTAGGCAGAAGATTCACCAGACATATCGGGTTCAGTACATACAAGATATCATCTTGCCCACGCCATCAGTCTTCGAAGAAAACTTCCTTTCCACACTCACATCATTTATCTTTTTCAACAAGGTGGAAATAGTTAGTATGCTTCAGGAGGATGAGAAGTTCTTGACGGAAGTGTTCGCTCAGCTAACAGATGAAGCAACAGAGGATGGAAAAAGGAGAGAGCTGGTCAACTTTTTCAAAGAGTTTTGTGCTTTTTCACAAACACTGCAACCTCAAAATAGGGATGCTTTTTTCAAGACGTTAGCAAACCTAGGAATTCTCCCTGCGTTGGAAATCATTATGGGTATGGATGATCTCCAGGTGAGAGCTGCAGCCACAGATATCTTCTCATATTTGGTGGAGTTTAGTCCTTCCATGGTCCGAGAGTTTGTAATGCAGGAACCACAGCAGGCGGATGATGATGATGTCCTACTGATAAACCTTGTGATAAAGCAAATGATCTGCGACTCAGACCCTGAGCTGGGTGGTGCAGTACAGCTCATGGGGCTGCTCCGTACCCTCATTGACCCAGAAAACATGTTGGCACCCACTAATAAAACAGAGAAGACTGAGTTCCTCAGCTTTTTCTATAAGTACTGCATGCATGTCCTAACTGCCCCACTGCTGGCCAATACAGCGGAAGAGAGAAAGGACTTACCTGAGGAAACCACAAAGGTTAATCCAGTGTGTCCAGACAATTTCCAGACTGCTCAGCTGCTCGCTTTGATTCTGGAGCTGCTGACATTCTGTGTAGAGCACCATACTTACCACATAAAGAACTACATCATGAATAAAGACCTACTGCGGAGAGTGTTGGTGCTTATGAACTCCAAGCACACCTTCCTGGCACTATGTGCCTTGCGGTTCATGAGGAGAATAATAGGACTGAAGGATGAGTATTATAACCGCTACATCATTAAAGGGAACCTATTTGAGCCAGTCATTAATGCTTTGTTGGATAATGGGACGAGATACAATCTTCTCAACTCAGCCATCATAGAACTGTTCGAGTTCATCAAAGTGgAGGACATAAAATCTCTGATTGCTCACATTGTCGACAACTTCTACAAAGCACTTGAATCTATCGAGTATGTTCAAACATTCAAAGGCCTGAAGGGCCGCTATGAGCAAGAGAAGGACAGACAGAGCCGAGGGCTTAGCAGGTACCGTCGTGATGCTCGGTCTCTGGAGGATGATGAAGAAATGTGGTTCAATGAagatgaggatgaagatgaggCAGAAGCAGCTGTTGAGAAGCGAGTCGACGAAGAATTTCCAGAAACCTACGGAAAGTACATGGGCACAAAAAAAGTTAAAGAAAGTGAGGACAAGGAGAATCTTCCAAAGCGGACGCCAACTGCCAGCTTTAAGTTTACCTTCTCTCATTCTGCAGGAGCCGCCAACGGAAACAACAGTGCCAGCAACAAACCAGCTTCGTCTGCCTCTCCTGCCAGTCCCATTGGCTCCTCAGGAAAGGCGGCAGCAGCACTGCCCTCCACCCCTGTGGTAAAGACTGGACTGGTTGGCCTTGTGGACTACCCAGATGACGAAGATGAAGATGACgaagaagaggaagatgaggaggaaGACATGTCTCCAAGAAAGCGACCCAGACTGGGCTCGTAAGACACAGCTGTAGTCCTCCACTCTAATGTCCCATGGTGCCACCGAGTCCTGTTCTTATGGGCTTAGGGACCCAACCCCAAACACAGTTCCCCCAACCACACCCCTCCTGCCCCCAGTTCTACTACCTTTTTGCTCAGACACAAGTACCACCAGACTTTGGGCAGCAGAGGACAGAGGTGTACGGATCCTTTGCCACAGTCATTTGAGCCCTCCCTGAATACCCCACCACCACTTGATCCTGTTGTACCAGGTTGTACCAGCAGGGGTGCTGAAGTTCACCACAACCACAGttgttttttcctattttctcccacCAGTGGAGAGTGGAGTTACCATGAGAGCCAGTCAGCCTAGCAGGACTAGCCATTTAGTATTGGAAGCTTGATTGGCAGAGCCTACCGAGCcatgcgtctttttttttttttttcttcttcttcttcttcttcttgatcCAGGATGGGTGCAGGGAGTAAGAGATTGAATGGGGAGGGTGAAATTGGGGGGTAGATTTCCAGGCATGGGTCTAAAGAGTAGAACTTGTTATTGTCTATGACTTGGAGCTCAAGTTCAGATGTTTGAGATCTTGTATTCCTGAGTTTATTACGAGTAGTGTACAGCTGTATTTTTCCCCGCCCCGTCTTTTTAATTGTTTCCccccagtgatttttttttttattattactataattcAAAAGAGGGGACAACTACTCCTGCCAGTGtacattttctctctcctcttttggCACACAGCAAGGTGGGATGACAAGTTTACCCCTTTTTAATCAAAATTCTTTCGTTCATTGAAGAAAACGAGACGTTCTGTTGCTGATTTTAATAACGTGTATTAAACTGCAGTAAAGTCATTTTGCAGCTGAATGGAGCATGTCTGAGGGTGTCTGTGTTGTTCATTTCGTCATGAGAAGAATTTCCACGTCTGAATGTTCGTTCCTTTTCTTCTGTGAGGAGCGCAGGCTCTCCTCAGCAAGTGGCTTCATCACCAGAAGATAACTCCTGTCACCAGcacactatattatatattatattctgaaGTATTAAATATTCTGACAGTTACACACTAGCTGCATTCCAAAGCTTAGGATGCAGGTCATCTGTATATTTAAGGCTCTTTTTCAATGCCATTTTGGTCATATGTATCAATTAATTTACATGGTAGCCGATTATATACACCTGGAGCAGTCTAATAAGGCTTTGTCGCGATGTCACCAGTAATGCTCCGCTTTTTTGCAACTGCAGTGCGACGcatgaataatttacatttatttttgtgacATGGTGGCCACAAATTGCAGCCTAGGATTTGGGATGCAGCTACCATTTGGCTGAAACAGACATTCCTCTCACTGTTTGCATCTTGCAGGACCTTCCCATGCTCCTGCAAAATGCCATCCCAGATGCACCAAAAGAAGACCATGAGATTTGGTCTTTGTTTGGGTCCTTGCTGAATTGTGTAAAGCAGGGATTGAAGCTGGAACTGGAGCATGAATGGGCCTTCCTTGTATGAACTGGTGTTAAGTCTGAAGTTCATCCAATTTAAGTACCACTGTTGGAACCACACCTACATCATTTTCAGGTGGTTAGGGTTGATTTCTTGaaggttttgtttttgtttctctccaTTACTTTTTGTACAAGTCCATTTACAACCATTATCTCCACTCTACAGCATTTGTATACATTTGATAAATGAAAAAAGTTCAGATTAAATTTGAGCCTGGCATTTAAA

Function

GO: NA

KEGG:

id description
K17491 SMEK, PPP4R3; protein phosphatase 4 regulatory subunit 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU249288 lncRNA downstream 103449 11476636 ~ 11479389 (-) True G183963
TU249285 lncRNA downstream 114585 11467857 ~ 11468253 (-) True G183960
TU249171 lncRNA downstream 235675 11346910 ~ 11347163 (-) True G183884
TU249141 lncRNA downstream 395296 11160598 ~ 11187542 (-) True G183857
XR_002651526.1 lncRNA downstream 405654 11157282 ~ 11177184 (-) True LOC111195215
XR_002651533.1 lncRNA upstream 933902 12528574 ~ 12633591 (-) True LOC111195221
TU249451 lncRNA upstream 1087823 12682495 ~ 12682697 (-) True G184094
TU249515 lncRNA upstream 1198110 12792782 ~ 12794964 (-) True G184150
TU249517 lncRNA upstream 1200572 12795244 ~ 12795519 (-) True G184152
XR_002651535.1 lncRNA upstream 1211609 12806281 ~ 12812440 (-) False LOC111195223
XM_022681866.1 mRNA downstream 8695 11511180 ~ 11574143 (-) False ccdc88a
XM_022681869.1 mRNA downstream 8696 11511180 ~ 11574142 (-) False ccdc88a
XM_022681865.1 mRNA downstream 8696 11511180 ~ 11574142 (-) False ccdc88a
XM_022681867.1 mRNA downstream 8696 11511180 ~ 11574142 (-) False ccdc88a
XM_022681868.1 mRNA downstream 8696 11511180 ~ 11574142 (-) False ccdc88a
XM_022681878.1 mRNA upstream 2606 11597278 ~ 11611851 (-) True pnpt1
XM_022681879.1 mRNA upstream 18984 11613656 ~ 11627474 (-) True cfap36
XM_022681880.1 mRNA upstream 18984 11613656 ~ 11627471 (-) False cfap36
XM_022681898.1 mRNA upstream 78421 11673093 ~ 12525320 (-) False LOC103040758
XM_022681896.1 mRNA upstream 78421 11673093 ~ 12525319 (-) False LOC103040758
XR_002651529.1 other downstream 171196 11402707 ~ 11411642 (-) True gtf2a1l
TU249167 other downstream 276017 11306289 ~ 11306821 (-) True G183880
TU248707 other downstream 1730457 9845822 ~ 9852381 (-) False G183585
TU248668 other downstream 1925224 9655313 ~ 9657614 (-) True G183559
TU248263 other downstream 4080766 7490506 ~ 7502072 (-) False LOC111195271
TU249404 other upstream 600540 12195212 ~ 12196658 (-) True G184051
TU249635 other upstream 1647351 13242023 ~ 13281803 (-) False LOC111195225
TU249668 other upstream 1956598 13551270 ~ 13594753 (-) False LOC111195226
TU249671 other upstream 1956598 13551270 ~ 13594753 (-) False LOC111195226
TU249876 other upstream 2468985 14063657 ~ 14116456 (-) False LOC103032041

Expression Profile