RNA id: TCONS_00013681


Basic Information

Item Value
RNA id TCONS_00013681
length 337
lncRNA type read_through
GC content 0.48
exon number 3
gene id XLOC_006249
representative True

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 47189134 ~ 47453908 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGCGTCGCCAAGCGCGCTCAAGAGAAAGTCTGTGTGTGTGGACCTGTGACTCTACATGAATGACTCAAGTGAATAACACCCGTGAAACCACTATTTCAAAAGGAAAAAGAGGAGGAACAGGGCACATCTTCAACATTCGCAGTGGAACTAGTGTGCGCCACTGCGCAAAGTCTCTCCAAAGTCACTTGGTAACTTTGGCGCACAAGTGCAGCTTCATTCTCATGGTTTTCATTGCGGgtcTCAGTGAGGTGCAGACACAGCAGCAGCAGATCATCAGACAAAACGCAGATCTTCAGTGCCGGATGACTTGATTTTATTCATCACCAGAGATTCAGCT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00013424 lncRNA upstream 201952 46986747 ~ 46987182 (+) True XLOC_006246
TCONS_00012233 lncRNA upstream 1230666 45946940 ~ 45958468 (+) True XLOC_006237
TCONS_00012232 lncRNA upstream 1241676 45942158 ~ 45947458 (+) False XLOC_006237
TCONS_00013680 lncRNA upstream 1257598 45931157 ~ 45931536 (+) True XLOC_006236
TCONS_00013423 lncRNA upstream 1312164 45871425 ~ 45876970 (+) True XLOC_006235
TCONS_00013684 lncRNA downstream 609217 48063125 ~ 48064309 (+) False XLOC_006259
TCONS_00013685 lncRNA downstream 609220 48063128 ~ 48064309 (+) True XLOC_006259
TCONS_00013686 lncRNA downstream 1098798 48552706 ~ 48556760 (+) False XLOC_006262
TCONS_00013688 lncRNA downstream 1099045 48552953 ~ 48556760 (+) False XLOC_006262
TCONS_00013687 lncRNA downstream 1099045 48552953 ~ 48556760 (+) True XLOC_006262
TCONS_00012249 mRNA upstream 10855 47007075 ~ 47178279 (+) False XLOC_006247
TCONS_00012248 mRNA upstream 10855 47007075 ~ 47178279 (+) False XLOC_006247
TCONS_00012253 mRNA upstream 13484 47050726 ~ 47175650 (+) False XLOC_006247
TCONS_00012247 mRNA upstream 13683 47007075 ~ 47175451 (+) False XLOC_006247
TCONS_00012250 mRNA upstream 149579 47007147 ~ 47039555 (+) False XLOC_006247
TCONS_00012255 mRNA downstream 119497 47573405 ~ 47618847 (+) True XLOC_006252
TCONS_00012256 mRNA downstream 170008 47623916 ~ 47691710 (+) False XLOC_006253
TCONS_00012257 mRNA downstream 170317 47624225 ~ 47632494 (+) True XLOC_006253
TCONS_00012258 mRNA downstream 256526 47710434 ~ 47727611 (+) True XLOC_006254
TCONS_00012259 mRNA downstream 356303 47810211 ~ 47816048 (+) True XLOC_006255
TCONS_00012254 other upstream 53280 47120482 ~ 47135854 (+) True XLOC_006247
TCONS_00012252 other upstream 139108 47049912 ~ 47050026 (+) True XLOC_006248
TCONS_00012251 other upstream 146171 47039477 ~ 47042963 (+) False XLOC_006247
TCONS_00012245 other upstream 238650 46941931 ~ 46950484 (+) False XLOC_006245
TCONS_00012238 other upstream 961305 46227713 ~ 46227829 (+) True XLOC_006241
TCONS_00012261 other downstream 450160 47904068 ~ 47904182 (+) True XLOC_006257
TCONS_00012262 other downstream 592204 48046112 ~ 48046228 (+) True XLOC_006258
TCONS_00012270 other downstream 1449037 48902945 ~ 48903059 (+) True XLOC_006269
TCONS_00012271 other downstream 1528778 48982686 ~ 48982800 (+) True XLOC_006270
TCONS_00012280 other downstream 3066760 50520668 ~ 50521600 (+) True XLOC_006285

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU799096 True 380 lncRNA 0.39 1 CI01180000 63236 ~ 63615 (+)
tiger barb (Puntius tetrazona) TU140407 False 1094 lncRNA 0.39 2 NC_056711.1 18900618 ~ 18933128 (+)