RNA id: CI01000001_00105105_00108304.mRNA


Basic Information

Item Value
RNA id CI01000001_00105105_00108304.mRNA
length 4145
RNA type mRNA
GC content 0.42
exon number 5
gene id CI01000001_00105105_00108304
representative True

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 104255 ~ 109844 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGTTGTTTACTCCTGAGCTCCGGACAGGACCATAGGGCTGGACAGAGGAAACATTTAAGATCCAATACGCAGGACTTTTACGTCACGCCGTGGGGAACGAACCTCTGGGGTCTTTGCGCTGTTACATGCTGTTCGAGTGCAGGAGCTGTCAAAGAAGGAGGTGGTACTGAAACAAGAGTGATCTTGATTTAAGCCACAAACCTGTACTTGAAAACCATACTCATATTCTGGAGCGTCAGTTCATACCAAGCACATGAGAGGGAATTACTGGAGGAACCAATAATACGATTTAACTGGTAAGGATTAAGAAAGCTTGTAGACAAGACTGGAACAGAAACCTCCTCTTTGAAACCTTTTAAAGTATGAAATTATTACTACCTGTAACTCTTTTGAAGCTTTTTAACTTTTCTGTGATCTTTTTCTGGGCTGACAACGTTATACAACATTAAGAACCTTGCAGCCAAACTGGTCACACTAAAAGCATTCACATACGTACGTGCATATACTTGCTAAGAAAATACTAACAAACAATATATACTAAATATATAAATATTTTATGCAACTGTCTGTAAATACAGGAGTATTAGTAGTATTACTATTGTGATAAGTTACATTTACATAAAGTAAGTGTGCATGCATGTTGTAATGTAAACAGATAGACACTTACTCTATGTCTTTTTAGTTTTATGACACATAATTGCAAAGGGTATAAATATCCCTCTATGCTTATGTCATATGGCGGTACATTCTGGCAATTTCAGGAGTTAAACTGGGTGTCAAGTTCCTTGACGGCAGAAAATTCCACCCCTAACACCCGCCATAAATCAAAGCTGTGTTACAGAAAAACTCAGTGACGTTACCATGGAAAGGATGCAACTATTCCAAGCTCATCCAAGTGGGTAAAAGGTTCCGCACTTGCTTGGAACTTTGACCTCATCCTAGCCTGAAAGAAGTGGCGTAACCTCATAGTTAAAGATCTAGACTGGCAGTAGGTGGAGGTTCCCATTTTGCAAGGGGCAACCAATTACCCTTTACTATTGTGCCCTTGATCAAGAGAGATCATGTTACACCAGGGAGACTGTCCATGTTATAAAACTGACTTAAGAATCCCTGAAGTCCCTTTAGGTAACTTGAGCATGTCTAATGAAGTTGGTGTGGTAAAGAACGTGCTGACAATTTTGACAGTTAAGGGCTGGTTTGAAGGACATGGAATGCATATAGAAATGAGTCAAAGTTTTAAAGCAGGTGTCCAGAGCAAATAGCTGGGATTTTGTTTCCTTCTATAAGTCTACTTGGATGCAATTCAATCAGGAAGACTTCACTAATGTTTAGATTCATAACACCTTTGAACTTCAAAGCAAGCCACAGTTGACACTGTAAAATGTATTTACTCGAGACATTTAGGATAGGCTGTTTCTCAATGATGAATGTCTTTTTTGTCTTCATAGAGGTATTGGTGGACTTGCCAATGTGGTCACTCCAGTGACCTTTCAGGAATTGCAGCATAAGATTCTGAGCACAGACAAACACTCGCAAAAGAATGGCCGCATTGGAATTGCACTGTGGGCCGGAGCCTGGGAGTTGTGTGTGGGGTGGAGAGAGAGCTAACCTGCTTGATAGTTTTGACTCTGAGATGCAGGAATGGGAAGATCAACTACAGGACATGCAGAGGAAGATTGAAGAGGTGAGCAAAACATGCTTTGCAACTGCTGAGTTTGTCTCTAATATTATGATTGTATTTCAGTTGTACAATGAGGTCAAAGCAAGAAGAGAAGCCAGCGAAAGCGGCACAAACAATGTCACAAACAACAAAAGCCTGGACATTACTTTGCTTCCTGTCAACTCTCATTATAGATACCAGGCCAATGGTTATCATGAACCCCATGGTCACCCCAACAACAACTTCCCAATTCGTCAATGCAATGAAGTAAGAGCAGATCGTTCAGTTATGCAAAGCCTTGGGTTTCACCACCCCAGTGATTACTATAATGGCTCCAACAATTCCTCACTTGATTCCCTGAGCAACGGCAGCCATTATCCTGCCAGTTGTCATGATCTTGAAAAACAAGATGCCACCCTAGACATCCTCAATGGATATCTCCAACAGGGCCCGCATTTTGGAAAGAACTTAGGGAATCTTAGAACCCCAAATGCAAACCCCAAGGTATATCCAGTTACACACAGTTATCAAGATAGCATGAAGACTAGCCTGGTGACAAACAGGACTGCATCGTGTGTAGTTCAGGATGAGTTTGAGGAGGCTGAGAACAAGAAGAACAAGAAATCAAGTTGGGATGACTCCCAAGCCCGCCACGTTAGCTGGAAAGACCCAGTTTCATCAAACGAGCTTCCCCCTAAATATTCAGCTTCCAAACTGGCAGTCAGACAGAGAGATGCTTCTCCTGTAACCCCTCGTTCCACTTACCATGAGTCATCACAACAACCTGACAGGAAGTGCCTCTTGCTTGACAGGAAATCTGGCAGCCCATCAGTGTTGCGTAAGTTTGGTGCCATGTTGCAGGAGAACGAGGGGAAAACCCTGATAGAGGATGGTCTTGTGACCACAGTTGTCTCCACTGAACCTCCAAGGCACACCAGCACTCCCATTTGCCAGAGCAAGTTTGACGCCAAGCGGGCATCCACGCGTGCGCCCGTCCAGAAATGCCTTGCAGACTGTGACGTACTGGTAGCAGAACTGGAGCCCAGCCAGGAGCCTTGGGCAGCTGGTCCTTCTAGACATCTCCTGAATGGAGACAGAGACAGTGGGAGGGGTGGTAGTACTCTTGAACAGTATGGCTTGGCCTATAACTTAAGCCCGTCACAGTCTCAACTTAAATCGAAGTATCACAAGGCACCTCAAGGGCCTAAAGCCAACAAAGCAGGCTTCCAGGGTGAGAACCTATTCTCTGACTACCAGATGGTGGAGAGGATTCTGGCAGCAGGATCTCAAAACTTCAGGAAGATACACACAGGGCTTGATGTTGATACAAGACAGGGAAATGACAACTTGGAGCAACTTCTAGAAATGATGGAAATAGAGAACAACAGAAGTCAGAGGGTCACATTCACCCAGCAACTGGACACCAAGCAGGTCAACCATGAGTTGTCTCCTGCCCCCAGCAGTAGCAATTTTTCCCGTCCTGCTAGACCAGCCAATCAACGTCGTCCATCAAGGTGGGCAAAGCAGAACCCGTCAAGCAAAATCGCCCACACATCCTGCCCACCAAGCCCTGGCCTGAAAGCCAAACAGTTCTTGAATTCATATTTCCAGCACACAGAAACTGTGATCATGTGACCAGGATAGAACAACCTTGAATGGACACTTTAAAGGACATTTTCATAGACAAACCTTTGACCTTTTGTAGAACACAATCTACTTTTTTTGTATATAACCACCACCACTTCAAAGAACCTTATTGCAGCCCACTAGGATGGCCTGTGATATTTTCATTAAATAACTTCAAAAGGATACTGTTTTCATTTAACTCTGTGCTGTTTGAAGTGCTTTGGAAAGTAACTCCAGTGGAAATTCTCTGACCTGGTGAACTTCTGTGCCTATGAACCTTTCATTGCCTTTTTCTCTTCATTTCTTTCTGTCATTCTCATTCAATTTTGTATTCTTTTATTCTTTTTTCTATTTTCCTGAGTGCTTTGTGTACACTGCAGTTCTTTTGGTGCCATGTAGGGCATTTTTTTGTAACCATATAAGCATGTATGCAACAAGCATAACATATTTAAGCATACATGTCAACGAGTTATTGAGCCTTCTCTATTATGCATTACCTGTAAAGACGTGTGCAAATGTTTTGATGTTCTGTCAAAGTCCATTTCAGTACTGCATTAGTGCTTCATAATATTGACATGTAGAGGTCATTACGGGCTCATAATCTTTTTATAAGCCTTATTTGACTGCGCCTGACGTGGGCTGTAACTACGCGGTGCATGGCACCTTTCTGCGGGAACATGTCTGCATTCTCCAGCCTTGTAAAGAAAATCCTTTAAGTTCAACATCTGTGAAGAGTAAATTATATCTTTTGACCATATTATAATGAAGAAATGCTTTGGAATGTTTATTTAATGTTGTGATATGATCCTTACAAAAACGTGATGCTTTTTGTGTTTTTTTTCTTTCTCAGTATAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14261 lncRNA downstream 5350 98578 ~ 98905 (-) True G12846
TU14260 lncRNA downstream 6436 97338 ~ 97819 (-) True G12845
TU14259 lncRNA downstream 7057 96898 ~ 97198 (-) True G12844
TU14257 lncRNA downstream 9679 94121 ~ 94576 (-) True G12842
TU14256 lncRNA downstream 10169 93784 ~ 94086 (-) True G12841
TU14266 lncRNA upstream 41770 151614 ~ 153337 (-) False G12848
TU14264 lncRNA upstream 42238 152082 ~ 153337 (-) True G12848
TU14288 lncRNA upstream 44123 153967 ~ 154280 (-) True G12856
TU14291 lncRNA upstream 55109 164953 ~ 166160 (-) True G12859
TU14303 lncRNA upstream 68931 178775 ~ 179035 (-) True G12866
CI01000001_00001500_00064341.mRNA mRNA downstream 38679 708 ~ 65576 (-) True CI01000001_00001500_00064341
CI01000001_00113458_00118362.mRNA mRNA upstream 2085 111929 ~ 118447 (-) True CI01000001_00113458_00118362
CI01000001_00124107_00131285.mRNA mRNA upstream 13215 123059 ~ 131380 (-) False CI01000001_00124107_00131285
CI01000001_00192545_00195828.mRNA mRNA upstream 82087 191931 ~ 196831 (-) True CI01000001_00192545_00195828
CI01000001_00218182_00220017.mRNA mRNA upstream 107813 217657 ~ 220116 (-) True CI01000001_00218182_00220017
CI01000001_00222940_00227735.mRNA mRNA upstream 112956 222800 ~ 228007 (-) True CI01000001_00222940_00227735
TU14286 other upstream 12970 122814 ~ 125457 (-) False CI01000001_00124107_00131285
TU14263 other upstream 19658 129502 ~ 134925 (-) True G12848
TU14333 other upstream 136161 257372 ~ 257517 (-) True G12894
TU14337 other upstream 257398 367242 ~ 397133 (-) True G12898
TU15779 other upstream 1653825 1763669 ~ 1767458 (-) False G14104

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00043438 True 769 processed_transcript 0.44 2 NC_007134.7 40477220 ~ 40480582 (+)