RNA id: CI01000001_01668334_01670035.mRNA



Basic Information


Item Value
RNA id CI01000001_01668334_01670035.mRNA
length 1802
RNA type mRNA
GC content 0.41
exon number 2
gene id CI01000001_01668334_01670035
representative False

Chromosome Information


Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 1667762 ~ 1671167 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


TTATATAATGTGATTAGTTTTTAGGGTGATTTAACATTCTGTCAAGGGTTTACAGATGGGAAAAAAAGACGTTTTGGCTAATTCTGGCACATTTACAGCTATGTTCATTAATGTTAAAACTCATATCTTTCACCAAGAATAAGACAAGCTTTTGGGTGGCAATGATGTTCAACTCTAGTGGGATTCAAACCCACATACTTTTGGACATCTTTAACCACTAAACCACAGCACCCAAATGCTGCAGGCAGCAGTGTGCGGGTGGAGGGAGGGGGATGGATCTTCGCGTGCAGCCGGAGCATTGAGTCTGAGTGACGTCTCTCTGCTCTCTGAGGATCCGTGTGTTTTTGCATCGCGCTCCTGTTTTGCATCTACATCAGTTTTTCCAAATGACTTCTGCTCATCGCCTGTAAGTAACGAGAGGAAAACTGAAAGTGACTCCCATAGTATGAAGGTAAAATAAAGCGGAATCGTATCGTGACAGTTTAGATTCTCGCGCGCCGTTCGCTTACAGAGCCCTCGCTCGTTAGTTATCGATTGTCTTATTATCCCGATCGATTATTGTGAACGGAATCATGTCAGAAGTGCTGCCTTACGAAGAGAACATCTCTCCTTACGGTGATGATGGAGATGAAGAGCAGATATCCCTCACCTGTCGCCTGCAGAACAACAGCAGTAACTTCTTCAGTTCTGCGCAGAACAAACGAGCTCCGAAACTCGGACAGATCGGACGCAGTAAGAGAGTTGTCATAGAAGATGACAGAATTGATGAAGTTCTGAACAACACAGCAGAGAAGTCATCGGCGGGAGTGTAACGCTCAAGGACGATGTTAAAGCGGCAGGAAATCGTGGGTTACGTGCATTCTGCATCAAAAGCACTTTGCAGTCCCTCTTAATATGGGTTGAATTTCACGGTGCAGCAGCAGGCGAGGAGAGAGTCCCTGCTGCGGGCATCCAAACAGAGGAAGCGGGGCTCTATCTGCTTTCTCTCTTTAAGGGCATGTTTCATATCCCTTCTTATAAAGTGACATCTTACACTGGACATACAAGTCCTATGTTGTTTAAAATACATGTGGAGTTGGTCTGTAGTGGTCCAGATTCAGTTTATATTGTGAGAGGAATGCATTGATATCAATCACAAGCACAAATATGACAACATTCGTTCATTATTTTGCCGTGAGACTGAGCACTTGTTTTCTCCGAATCTTTTTGTGCACAATGAAACTTTAAATATCCTAATTATGATCTCCTGGATACATTTCGTGTTCTTTTGCAGAGATGACGGACTGAGAAAATGTTTTTTTTATAGGATGAGAAAGGAAAGACTACTTTTTTAAAGCAATTTTTTCATGTTGCATATTGTAATTTTTTTTGATGTGGCTGCAAACTGCCTGCTTAGCCTGAGTTCAAAAGCTTATTTTTATATCAAGGAGTTATTTCTGAAGAGAAAAAAAATGCTTATTTGGGTAATAGTCGTAGCACTTTCAAACGTGGTTGTCAGCTAAATGGATTTTGATCAATTTTGTGCCAAAAGTTTGCAAAATATGCCAGTCGACTTGTGTTCCCGTTTACCTGAGTAATGTGAAGTTTTCCAGGCCTGGCTCTCATATATGTTTCAGGGCTTTTCTAACTGCTTTTTCTTTTTTTGCATGAGACAGGCACAAACGCCTCCTGTGGCAGTGAATTACTATTATATTTACAGTAATGTTACTTTGAATGACGAACCTCAGACTCTTGAATATTGTGTATGTTGCACTTCTCTATAATGTTACACAGGGCTATATTTGCAATGAAATGTATGACCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU15133 lncRNA upstream 3270 1664265 ~ 1664492 (+) True G13570
TU14983 lncRNA upstream 102205 1560388 ~ 1565557 (+) False G13448
TU14984 lncRNA upstream 102205 1560388 ~ 1565557 (+) False G13448
TU14985 lncRNA upstream 102205 1560388 ~ 1565557 (+) True G13448
TU15044 lncRNA upstream 251110 1416412 ~ 1416652 (+) True G13493
TU15137 lncRNA downstream 11739 1682764 ~ 1683123 (+) True G13574
TU15301 lncRNA downstream 31959 1702984 ~ 1704437 (+) True G13697
TU15373 lncRNA downstream 107360 1778385 ~ 1778757 (+) True G13761
TU15375 lncRNA downstream 109131 1780156 ~ 1780359 (+) True G13763
TU15396 lncRNA downstream 231246 1902271 ~ 1907118 (+) True G13778
CI01000001_01656726_01659321.mRNA mRNA upstream 8332 1656057 ~ 1659430 (+) True CI01000001_01656726_01659321
CI01000001_01589727_01595957.mRNA mRNA upstream 71473 1589727 ~ 1596289 (+) True CI01000001_01589727_01595957
CI01000001_01545235_01551987.mRNA mRNA upstream 115739 1545235 ~ 1552023 (+) True CI01000001_01545235_01551987
CI01000001_01538233_01543680.mRNA mRNA upstream 123924 1538071 ~ 1543838 (+) True CI01000001_01538233_01543680
CI01000001_01530818_01536092.mRNA mRNA upstream 131527 1529799 ~ 1536235 (+) True CI01000001_01530818_01536092
CI01000001_01748436_01754956.mRNA mRNA downstream 77313 1748338 ~ 1754956 (+) True CI01000001_01748436_01754956
CI01000001_01762809_01771029.mRNA mRNA downstream 91784 1762809 ~ 1771029 (+) True CI01000001_01762809_01771029
CI01000001_01833609_01860272.mRNA mRNA downstream 162236 1833261 ~ 1860953 (+) True CI01000001_01833609_01860272
CI01000001_01868471_01873459.mRNA mRNA downstream 197446 1868471 ~ 1873519 (+) True CI01000001_01868471_01873459
CI01000001_01878297_01894123.mRNA mRNA downstream 207272 1878297 ~ 1896084 (+) True CI01000001_01878297_01894123
TU14532 other upstream 622610 1043713 ~ 1045152 (+) True G13051
TU14049 other upstream 1175705 490574 ~ 492057 (+) True G12653
TU14066 other upstream 1183352 478386 ~ 478781 (+) True G12670
TU13987 other upstream 1356821 309144 ~ 310941 (+) True G12614
TU16602 other downstream 1945223 3616248 ~ 3616411 (+) True G14846
TU17650 other downstream 3390193 5061218 ~ 5064704 (+) False G15794
TU17651 other downstream 3390193 5061218 ~ 5063929 (+) True G15794
TU17699 other downstream 3615724 5289881 ~ 5289956 (+) True G15838
TU17891 other downstream 4040860 5711885 ~ 5714951 (+) True G15995

Expression Profile