RNA id: TU14305


Basic Information

Item Value
RNA id TU14305
length 202
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G12868
representative True

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 184856 ~ 185057 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AATGGATGGATGGAACGATAGATAGAATGATAGAATGATAGAAAGAACGATGGATGGATGGAATGATAGAATGATAGAGAGAAATAATGATGGATGCATGGAAAGATAGACAAAATGACAGAACGATAGATATAGATTACAATGGATGGATGAAACTATAGACAGAACGATAGAAAAAACAATGGATGGATGGAACGATAGA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14303 lncRNA downstream 5821 178775 ~ 179035 (-) True G12866
TU14291 lncRNA downstream 18696 164953 ~ 166160 (-) True G12859
TU14288 lncRNA downstream 30576 153967 ~ 154280 (-) True G12856
TU14266 lncRNA downstream 31519 151614 ~ 153337 (-) False G12848
TU14264 lncRNA downstream 31519 152082 ~ 153337 (-) True G12848
TU14315 lncRNA upstream 17941 202998 ~ 203217 (-) True G12877
TU14316 lncRNA upstream 18435 203492 ~ 203706 (-) True G12878
TU14318 lncRNA upstream 24092 209149 ~ 209358 (-) True G12880
TU14311 lncRNA upstream 26252 211309 ~ 212246 (-) True G12873
TU14361 lncRNA upstream 92987 278044 ~ 278289 (-) True G12920
CI01000001_00124107_00131285.mRNA mRNA downstream 53476 123059 ~ 131380 (-) False CI01000001_00124107_00131285
CI01000001_00113458_00118362.mRNA mRNA downstream 66409 111929 ~ 118447 (-) True CI01000001_00113458_00118362
CI01000001_00105105_00108304.mRNA mRNA downstream 75012 104255 ~ 109844 (-) True CI01000001_00105105_00108304
CI01000001_00001500_00064341.mRNA mRNA downstream 119280 708 ~ 65576 (-) True CI01000001_00001500_00064341
CI01000001_00192545_00195828.mRNA mRNA upstream 6874 191931 ~ 196831 (-) True CI01000001_00192545_00195828
CI01000001_00218182_00220017.mRNA mRNA upstream 32600 217657 ~ 220116 (-) True CI01000001_00218182_00220017
CI01000001_00222940_00227735.mRNA mRNA upstream 37743 222800 ~ 228007 (-) True CI01000001_00222940_00227735
CI01000001_00238241_00249437.mRNA mRNA upstream 53184 238241 ~ 249437 (-) False CI01000001_00238241_00249437
CI01000001_00305883_00333574.mRNA mRNA upstream 120434 305491 ~ 333798 (-) True CI01000001_00305883_00333574
TU14263 other downstream 49931 129502 ~ 134925 (-) True G12848
TU14286 other downstream 59399 122814 ~ 125457 (-) False CI01000001_00124107_00131285
TU14333 other upstream 60948 257372 ~ 257517 (-) True G12894
TU14337 other upstream 182185 367242 ~ 397133 (-) True G12898
TU15779 other upstream 1578612 1763669 ~ 1767458 (-) False G14104
TU15917 other upstream 1809153 1994210 ~ 1994898 (-) True G14219
TU15926 other upstream 1870917 2055974 ~ 2056478 (-) True G14228

Expression Profile