RNA id: TU14060


Basic Information

Item Value
RNA id TU14060
length 332
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G12664
representative True

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 468102 ~ 468433 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCTGTTTATTCATTAGTGTATGTTAAAAACGTCTTTATTTGTTCTTCCTTCTCCATTTCCACTTGAGAAGTCTGTATGCAGCCTGCCTGCAAGAGAGATACAGAGCACAACCTTCCACTGTATAATCACGTCATTTTTTCCATTTTCTTTTAATGTAAAACCATCTGAGGCACAACACTTCCAGTGTTCACAACCCAAAGAAACAGAAAATCTACACAGAGTGATTCACAAAGCTGCCTGAATTAAAAACATTAGCAGTGTACAAAATATAGATGAATAAATGACATAATAATAATAGTAGTAGTAGTAATAATAAAAATACTAACAATAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14046 lncRNA upstream 28350 437528 ~ 437637 (+) True G12650
TU14052 lncRNA upstream 48867 418962 ~ 419235 (+) True G12656
TU14042 lncRNA upstream 51261 414496 ~ 416841 (+) True G12648
TU14023 lncRNA upstream 94617 372764 ~ 373485 (+) True G12629
TU14022 lncRNA upstream 107885 359969 ~ 360217 (+) True G12628
TU14071 lncRNA downstream 36054 504487 ~ 504749 (+) True G12674
TU14086 lncRNA downstream 56041 524474 ~ 538363 (+) True G12685
TU14089 lncRNA downstream 71263 539696 ~ 545356 (+) True G12686
TU14102 lncRNA downstream 84020 552453 ~ 552967 (+) True G12698
TU14103 lncRNA downstream 84584 553017 ~ 553949 (+) True G12699
CI01000001_00440891_00444667.mRNA mRNA upstream 23119 440891 ~ 444983 (+) True CI01000001_00440891_00444667
CI01000001_00436821_00439097.mRNA mRNA upstream 28372 436821 ~ 439730 (+) False CI01000001_00436821_00439097
CI01000001_00433013_00435064.mRNA mRNA upstream 32563 433013 ~ 435539 (+) True CI01000001_00433013_00435064
CI01000001_00426295_00431004.mRNA mRNA upstream 36870 426065 ~ 431232 (+) True CI01000001_00426295_00431004
CI01000001_00400604_00401694.mRNA mRNA upstream 66178 400425 ~ 401924 (+) True CI01000001_00400604_00401694
CI01000001_00483853_00488761.mRNA mRNA downstream 15420 483853 ~ 488825 (+) False CI01000001_00483853_00488761
CI01000001_01088316_01091350.mRNA mRNA downstream 619883 1088316 ~ 1091578 (+) True CI01000001_01088316_01091350
CI01000001_01168378_01169553.mRNA mRNA downstream 699084 1167517 ~ 1169642 (+) True CI01000001_01168378_01169553
CI01000001_01209204_01212045.mRNA mRNA downstream 740771 1209204 ~ 1212252 (+) True CI01000001_01209204_01212045
CI01000001_01248946_01251200.mRNA mRNA downstream 780513 1248946 ~ 1252096 (+) True CI01000001_01248946_01251200
TU13987 other upstream 157161 309144 ~ 310941 (+) True G12614
TU14066 other downstream 9953 478386 ~ 478781 (+) True G12670
TU14049 other downstream 19061 490574 ~ 492057 (+) True G12653
TU14532 other downstream 575280 1043713 ~ 1045152 (+) True G13051
TU15116 other downstream 1199587 1668020 ~ 1671004 (+) True CI01000001_01668334_01670035
TU16602 other downstream 3147815 3616248 ~ 3616411 (+) True G14846

Expression Profile