RNA id: TCONS_00012992


Basic Information

Item Value
RNA id TCONS_00012992
length 2428
RNA type mRNA
GC content 0.47
exon number 11
gene id XLOC_006748
representative False

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 33155428 ~ 33207424 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TATTTGCATTGCTAAACAATCCGTGGAGTGGGCCGAGTACGGAATACAGAgattctttttctgttttttttatatagctaGACACTCCTCTTAATATTGGTCAATGTTCTCACAGGTTCTTGCCTTCGGTCGACAGGGCGGCCGCAGCGGGTGACCAAAGACAAGCGTCTCGACGTTCAAGTGATCGCGCGTGCATGCGGCGGGGGCGCGGAGGGCACTTCATTTTGCGCATTGGGTCCTGCAAGCCCGCAAAGCTAGTAAAGCCACAGCAATAAGCTCTTTTGCTAGCGCGAGGTAGTGTGACTTTCTTTCCAGGGGAAGCACAGGGATCCACATAAACATGTTTGTTGAACTACGTGGCTTGAGTTTGTTGTCCAGCAAAAGAATGTTGTCAGTTGTACTATGTATCGTGTGCTCCATTAACTATGGGAAAAGTCAGACGTGCTCAGATGGGTTTACTTTTGATCGTCGTTCCAGACAGTGTATGGACATCGATGAGTGCCGGACACTGCCAGACCCATGTCGGGGTGACATGCGATGTGTAAACCAGAATGGAGGATACCTGTGCATGCCCCGTGGACTCTACTCCCAGTCCTACGGCCGGAACAGTCCACTCCCCTACCCTGAGGCTTCCTATCCTGAAGAGCCCTACCCTGACAGATCACTGGGTTATTCTGAAACATACAGTGCTCCTGTGGCTCCTGTGGCTCCTGGCCCTGGTCCAGGCCCTGGTCCCAGTTACCCAATAGTGAGTCGAACCACTCCCTGTCTCCTTGGATATACATTCGGTGCTGATGGCACTTGTGTTGatgtggaTGAGTGTGAGGCAGAATCACATCAGTGTAACCCTACTCAGGTGTGTATAAATACAGCCGGTGGATATACCTGCTCGTGTACTGAGGGCTACTGGCTGGTGGGAGGACAGTGCCAAGACATTGATGAGTGTCGATATGGTTACTGCCAGCAGCTGTGCGCTAACGTCCCTGGCTCATATTCCTGTTCCTGTAGCCCTGGATTTCTTCTCAATACTGATGCCAGGACATGCCAAGATGTGGACGAGTGTGTGACGGACCCATGCTCTCACGGCTGCTTGAACACATACGGGTCATTCATGTGTACCTGTGATGAAGGCTTTGAGCTTGCCGCTGATGGCACCACCTGCAATGATCTGGACGAGTGCAGTTTCTCAGACTTCCTTTGTCAGCACACGTGTGTGAATGCACCGGGATCGTTCTCCTGCGCGTGTCCGTCTGGATATTACGTGTATGAGGATGGAAGAAGCTGTGAAGACCTCAATGAATGTGAGTCTGGTAACAACACCTGTACAACAGAACAAGTGTGTTTCAATTTCCAGGGAGGTTACACATGTCTGAACCCTCTTAGATGTGATCCACCTTACATAGAGCTCAGTGACAATCAATGCATGTGTTCCGCTGAGAATCCTGCTTGTCGGGATCGACCCTTTACGGTTCTGTACAGGCATATGGATTTGTCTTCTGGCCGAAGTGTTCCTGCAGATATATTTCAGATGCAGGCCACTACACGTTACCCTGGAGCATTTTACATCTTTCAGATCAAGTCTGGCAACGAGGGAAGAGAGTTTTACATGCGGCAAACAAGTAATATGAGTGCAACTCTGGTTCTGGCCCGACCCATTAAAGGACCAAAGACCGTCGTTCTAGACCTAGAGATGGTTACCGTTAACAACGTCATCAACTTTCGAGGCAGTTCAATCATTCGTCTCACAATATTTGTCTCCGAACATCCATTCTGAGGCTTTACCAATGAACCTCTGACCTCTCACCTCCATCATGGACCTCCTGTTACTGCACTACCCATCAGGCAGCTGCGTTTCCTCATTGTATTTGTTCTGTGGTTCAGGACTCTCATGTTTTCATCACACTCTCTGTCTGCTTTATTACAGCAGGTGGAGTTTGTGctgatttttaatatttcataatgCAGGTGTTCAGTTAGGCTACCTGGCTGTCGCAGTCACACACCTACACATGTACCCATACACAGAAGAATATTTATGTTGTGTTTCTTTGgtcttgtttgtttgtatgtccCTTTTGTGCATTTTCTTCCCCCAAAGCTGAAGTATCTATTTTAAAGCtgaatttagtttcagtactttTTGCAGCACCTGTTTCACATTGTCTCACTGTGACTGTGAGGGACGCTTTTATTTGGTCTGAACTTCTGAGCACTCAAAACAGTGAGAGAGCCACCAGGattgcaataaaataattttaaattaaaatgtccaGATTAGCTCTGACAGTAGCCTGCAGAGCACCTTTCGTACCTTTAGCTCTGAATTTCTTATCATTTGATCTCTGCAGAATTTCctctgtgtatgtttttatttgacaGGTAAAAAAAGAGCCCGGTCAGTCAATAAACAAACATTTGATGACCTGAA

Function

GO:

id name namespace
GO:0048251 elastic fiber assembly biological_process
GO:0005615 extracellular space cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
ko04990 Domain-containing proteins not elsewhere classified

ZFIN:

id description
ZDB-GENE-041010-54 Predicted to enable calcium ion binding activity. Predicted to be involved in elastic fiber assembly. Predicted to be located in extracellular space. Is expressed in bulbus arteriosus. Human ortholog(s) of this gene implicated in age related macular degeneration; autosomal dominant cutis laxa 2; autosomal recessive cutis laxa type IA; and cutis laxa. Orthologous to human FBLN5 (fibulin 5).

Ensembl:

ensembl_id ENSDART00000057382

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00012984 lncRNA downstream 145789 33005318 ~ 33009639 (-) True XLOC_006742
TCONS_00013862 lncRNA downstream 158932 32946711 ~ 32996496 (-) False XLOC_006741
TCONS_00012971 lncRNA downstream 347787 32793864 ~ 32807641 (-) True XLOC_006738
TCONS_00012963 lncRNA downstream 532905 32621834 ~ 32622523 (-) True XLOC_006734
TCONS_00012962 lncRNA downstream 535302 32602178 ~ 32620126 (-) False XLOC_006734
TCONS_00013003 lncRNA upstream 90398 33261131 ~ 33267535 (-) False XLOC_006752
TCONS_00013863 lncRNA upstream 90398 33261131 ~ 33267584 (-) False XLOC_006752
TCONS_00013001 lncRNA upstream 90398 33261131 ~ 33267585 (-) False XLOC_006752
TCONS_00013864 lncRNA upstream 90398 33261131 ~ 33267600 (-) False XLOC_006752
TCONS_00013002 lncRNA upstream 93930 33264663 ~ 33301170 (-) True XLOC_006752
TCONS_00012991 mRNA downstream 1539 33141279 ~ 33153889 (-) True XLOC_006747
TCONS_00012990 mRNA downstream 20817 33123484 ~ 33134611 (-) True XLOC_006746
TCONS_00012988 mRNA downstream 40494 33066605 ~ 33114934 (-) False XLOC_006745
TCONS_00012989 mRNA downstream 40495 33067656 ~ 33114933 (-) True XLOC_006745
TCONS_00012987 mRNA downstream 100572 33041259 ~ 33054856 (-) True XLOC_006744
TCONS_00012994 mRNA upstream 3485 33174218 ~ 33194647 (-) False XLOC_006748
TCONS_00012995 mRNA upstream 4527 33175260 ~ 33207424 (-) False XLOC_006748
TCONS_00012996 mRNA upstream 26068 33196801 ~ 33198150 (-) False XLOC_006748
TCONS_00012997 mRNA upstream 29196 33199929 ~ 33207367 (-) True XLOC_006748
TCONS_00012998 mRNA upstream 40281 33211014 ~ 33227411 (-) True XLOC_006749
TCONS_00012961 other downstream 560208 32588552 ~ 32595220 (-) False XLOC_006734
TCONS_00012947 other downstream 1460381 31694931 ~ 31695047 (-) True XLOC_006722
TCONS_00012944 other downstream 1508422 31636732 ~ 31647006 (-) False XLOC_006720
TCONS_00012942 other downstream 1575864 31579448 ~ 31579564 (-) True XLOC_006718
TCONS_00012938 other downstream 1714488 31424590 ~ 31440940 (-) False XLOC_006716
TCONS_00013011 other upstream 440970 33611703 ~ 33639021 (-) False XLOC_006759
TCONS_00013017 other upstream 488975 33659708 ~ 33662353 (-) False XLOC_006761
TCONS_00013028 other upstream 1467896 34638629 ~ 34638746 (-) True XLOC_006768
TCONS_00013029 other upstream 1473417 34644150 ~ 34644281 (-) True XLOC_006769
TCONS_00013036 other upstream 2012261 35182994 ~ 35194759 (-) True XLOC_006773

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000012_07464278_07478699.mRNA True 1869 mRNA 0.49 11 CI01000012 7464278 ~ 7478992 (+)