Fish Transcriptome and Expression Database

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model fish

XLOC_006769 (BX649403.2)

Basic Information

Item	Value
gene id	XLOC_006769
gene name	BX649403.2
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007124.7
NCBI id	CM002897.2
chromosome length	52186027
location	34644150 ~ 34644281 (-)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00013029
TGCAACAGTTACTGCTTTAACTTGAAAAAATTTTATTGACTGTTCAATATTCCGGTTGCTCACTGAAGCTGagttgagcctggtcagtacctggatgggcgaccacatgggaaagctaggttgctgttggaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000085188

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00013029	True	132	rRNA	0.44	1	34644150	34644281

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_006768	BX649403.1	coding	downstream	5404	34638629 ~ 34638746 (-)
XLOC_006766	flrt3	coding	downstream	821600	33811842 ~ 33822550 (-)
XLOC_006765	mad2l1bp	coding	downstream	943689	33695678 ~ 33700461 (-)
XLOC_006764	cst3	coding	downstream	960237	33675556 ~ 33683913 (-)
XLOC_006763	zgc:163030	coding	downstream	972456	33669936 ~ 33671694 (-)
XLOC_006770	ism1	coding	upstream	120860	34765141 ~ 34793487 (-)
XLOC_006771	sptlc3	coding	upstream	159962	34804243 ~ 34862484 (-)
XLOC_006772	btbd3b	coding	upstream	397611	35041892 ~ 35051897 (-)
XLOC_006773	CR932983.2	coding	upstream	538713	35182994 ~ 35194759 (-)
XLOC_006774	NA	coding	upstream	561016	35205297 ~ 35289437 (-)
XLOC_006471	BX537274.2	misc	downstream	24379245	10264741 ~ 10264905 (-)
XLOC_006338	rn7sk	misc	downstream	33817925	825904 ~ 826225 (-)
XLOC_006757	NA	non-coding	downstream	1180506	33452438 ~ 33463644 (-)
XLOC_006758	NA	non-coding	downstream	1184832	33457523 ~ 33459318 (-)
XLOC_006752	NA	non-coding	downstream	1342980	33261131 ~ 33301170 (-)
XLOC_006741	NA	non-coding	downstream	1647654	32946711 ~ 32996496 (-)
XLOC_006775	CU138575.1	non-coding	upstream	726288	35370569 ~ 35370684 (-)
XLOC_006779	BX663524.1	non-coding	upstream	947961	35592242 ~ 35592377 (-)
XLOC_006784	NA	non-coding	upstream	1280761	35925042 ~ 35925484 (-)

Expression

Co-expression Network