XLOC_006770 (ism1)


Basic Information

Item Value
gene id XLOC_006770
gene name ism1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 34765141 ~ 34793487 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00013030
AACAATCTGAACGATTTTCCACCAAGtatcatataaaaaatatttcatgattATGCATACATGCTTCATTTATTTAAGCAACTGGGTTTTAAGCACTCTGCACCTAATTATCCCTCTATAATCTGTAAATGGTGGGCTATTGTTTTAGGACTCACAGAAagtctctagtgtgtgtgtgtttatattatgGGGCGATAAGGCGCAATGCAGCACCTGTGGGTAATTAGGCCATTTGAGGTGAGATTGAGTGAGCGGAGCTGCTAATGTCTCTAATCTCTCTCAGTGTAAACAAACAGTGCTGGGCTCAGCCAGATGAAACCAGTATTGTTTCCCTTGATCTCCATCTTCAAGGTCTCTTTCGTGAACATATGGCTGGTTATAGAGGCGTAAAAGACGTCTAGGTTGCAAATCGCACCtttcaaatgtaaagaaaaaGTAAGCTTATATTCAGGTAGCCTTTTTTATATAGGATTATGAGGTCCACGGTTACCATGTTTGCAccaataacatttaatttaggttgctttcttttgcttatatGTTAAATAGAGTGTGACAAAATAAGAACACGATGAACAATCTGAACACGATGCAATTGAATACGTTAAATGTGATaagttacaataaataaataaatcagccttCATTTACTTATCTACGACTATTTCCAAAGCATTTTCATTGTTCAGTTCTGTTGTTTTTTCctgctatgaatgtcaatggttgctggtttccaacattcttcaaagtatcggAATGGAGATAGAGTTGTTGGTGTTTGTTACCATCTTGATTTTTTGTTGATCAATCTATTTGATAAGCTCAGGACTGTGTAGCTAGTTCGTTTGTCTTCTGAAGTGGTGTACAAGCACTAACCAATTTGAAAAAAAGGGTCCAACAGGTCAAAATACATCTGGTAGTGACAATTGTTCTATtcatgtttggtttttaaaaaggtttgtttGTACAGTGtaaacaatgctgggttccacacaaaatgtttgtgctgggacaacacgAAGGAACTAAGgcatcccccccaaaaaaaaaactcaaaatatgtgttgtttcagctcatttgaaatTAGTTtggacaaacagcaaatgtcatttgaGTGTACGCACTGTGTTGTCAGAATGACCTCCATCCACATGTATCCATTAAAACGCTTAAAATTGCTGTATTGTTAGTCCAGGTCAGTAGTTGacaaagtcactttgttaatagtattaataatattaataataatattaataataattaaattaataaataaatataaatgataaatcagttttttatttttatttattttatatacacactTCATCTTCACAGTCTGTAGACCAGCATTGCTATCGAAGGGATAATAAATGTACATTGTAAGTTGTTGTTTTCCCAAGTCACTGTTTCATAGTTTACACAGATCTGATATGGCATCATggtatcaaaataaaaattgcGCTTTACACAGTGTGCGTTTTACTCAAAACCAGTGGTTAGTAAACAGTAAATGTACAACATAGTTTCAAGATTTTACTTCTAAATGGCGTACTATTATGATAATCTATATAATAATATCATCATTATAACATAAAATTGTGAGACTTTTTCTAGCCAACAAATAATGAATCTGAAGATTTTGAGCATGTTAATTGTTCTCGTCTGTATTTACGGAATCAAGCTAATAACCGAGATGAATTTCTGAATTTGTGACAACAGAGAGTCAAGAAGTGTACACAGAGGGATGATTCACTCGGATCTGTTTTCTTGAACATTCATCTTTTCTAAGAATAATTCAAATCCATGATTGTCTGTGGACCAACTGGAGGCTCACAATGAACTGAGCCAAAAGTTTGTCCTTTTAGTGGACTGCTGTGaactttgcaaaaataaaaaaaagtgataaaatgtaaataaccaTTGAGTAAGCAAAGTGACCGAATGCTAAAACGTGGCTCCATAAGCAGAGACATGCTAATCTAATGGCTTTCTACTGTTTCTGTTATGCAGAATAATGTGAATGCAGATAGCAGCTCCTCAGTTCAGCTGGGGCCAGGTGACAGACAGACTCGGGTGGCTCATATTCCAGCATCTCAGCCTTGGGCTCAGAGTCCCGGGACAAGGGGCAGCCTGCAGCGAGACGGCCCTGGAGCTTTCCTGCTGGACCTGCAGAACTTTCCTGATCTCTCCAAAGCAGATATAAATGGGCAGAACCCCAATATACAGGTCACCATAGAAGTGGTGGACAGTCTGGAAGGTTCTGAGCCAGAGAAGGGAATGCGTAAAGAAAACAAGCCTGGCTGGGCAGCTCCTAACTGGAGGAACTGGTGGCAGCGTTCATCATCCTCGTCCTCATCTTCTGTGTCCACTCCGAAGGGGCCTGAGGAACAGGATTACCCCTACGAGAGCAACACAGAGGACAGCAACTTCCTCAAGCCACTCGGAGACTGGGAGAGAAGAGTGAAGAGTGAAGCTGGAGCGGGAAGCAGAACCCAGACTGAATACGACTACATAGACGGGGAAGGCGACTGGAGTGCTTGGTCTCCATGCAGTGTATCCTGTGGAAATGGTAACCAAAAGCGGACCAGATCGTGCGGTTATGCCTGCACTGCCACAGAGTCACGGACATGTGACATGCCCAGCTGTCCAGGGATTGAAGATGCATTCAAGACGGCAGCAACTGAAGTCAGTTTGCTCGCTGGCACTGAAGAGTTCAATGCAACAGAGCTGTTTGGAGTTGATACCGACAGCTGTGAGCGTTGGATGAACTGCAAGAGTGAGTTTCTCAAGAAATACATGAGCAAAGTAGCCACTGATCTACCCAGCTGCCCCTGCTTTTACCCAACCGAGGTGGCCTACAGCACCGCAGACGTCCACGATGCCAACACCAAACGCAACTTCCGCTGGAAGGACGCCAGCGGGCCAAAAGAGAAGCTGGAGATCTATAAACCCACAGCCCGCTATTGCATCCGCTCCATGCTCACGCTGGAATCCACAACGTTGGCGGCCCAGCACTGCTGCTACGACGACAGCATGAAACTCATCACCCGAGGCAAAGGAGCCGGTACGCCAAATCTTATCAGCACCGAGTTCTCCGCTGACCTACACTACAAAGTGGACATCCTACCCTGGATCATCTGCAAGGGGGACTGGAGCCGCTACAACCACGCTCGACCCCCCAATAATGGACAGAAATGTGCAGAAAACCCTCAGGATGAGGACTACTATAAACAGTTTGAAGAGGCCCGGGAGTTTTGAAAACTATGTACTTTCGAAAAACAGAAGCAGAACTTGTGTTGAAAGCTGGCTGTGCGTTTGAAGAGGACTTGCTATAAGAAACAGACAGCACTGTCAACAATGCGCAGAGATCTTCATATGGTCTCCCTCAAAACCTTGGGTTCAAAAGTGGAAAATCCATCATGGTTCTCTttgtattatgtatattatttggGGAATCTCTAAATTGTTTGAATTTTTTAAGGAGTAAAGGGAAAGAATGAAAGGGAAGACATATCAGGAAATCACCAATGCATCAATGAGCAACCAACAGCTAGAGTTTCCCATATCTTTGCATGCTTGTATTACACTTAACATGCAGTTGGAAACCCTTCTCCTCAGGACTCTCCAACAGGACATTGGATACAACATTCAGGTTCCTGTGTAAACATGCGTATATTTGTCTAGCTGAATGAAAAGAATTCCCATATAATGTCCTGTTGTATCATGGTTCCGTTTTTACTAAGAACAAAACAGCCCTGTGTAATCTTTGcaaagtatttattaagtcatagTTATGTGTCAGTGGTAGGGATTTGTGCATCTAGATGTATGGACAGATTTTGAGTGCTAAATAAAGAGACCATGTCACATTAAAGGTCACCATCAAACGATTCTCAACA
>TCONS_00013031
GGAACTTTGGATCATGATCACGTTGAAGATGGGCTTTACGCTTCATCCGTGAAGACTTGGGCGTTTGGAGAGGATGACAGCACTTTGCGCAACACACAGAAGCGCAGCAATGTATCCATCTCAGAAGTTTTATATTAGAGAGGTAAACAACCCACGAAGATCTGAGCTTGCTTGACCTGGAGTCATtagtgttttatttcattttggaaaaaaataagaatGAATGATCTCAGAATGATGCATGACTTACCTGCGCACAAGTAAAACTGACCCCAAATAAAGTAGTAAAACGTCGCATCTCAACcaataaagtgcattttattcTGATGTAAAAAGAAAGTGAATACCTCAATGGAATGGTACACGACTTTGGAGTTTTTGGGACTTACTTTTCTATTTTGTAACTGTAAATCGAGTTCTTTTTGGACATCAGGATTACCCCACTTTTAAGTTCAGGAGTTATAGATCACCCACTGATCTGATTGGTTTTCAAACGTGGAGTGATTGGGCTTTTTCGAGGGCATTTCCAGCCACTCTTTTTCCCGTGAGTATTGCTCTTCTGGACCCAGAGGTGGCTCCGCAGTGGTGTTGCGGCTCCTCGTCCGCGGCGGATCCCGAGCTCGGAGTGTCTGCAGCGGCAGGAGGCAGTAGCGGAAGCCCGGCAGCGGCGGCGGCGGCGCAGGGTCCTAAGAGCGCTCGGGTGAAGAGGATGGTGCGTCTGGCGGcggagctgctgctgctgttgggACTCCTTCTTCTGACCTTACACATCACGGTGTTGCGGAGCAGCCCGCTGCAGCACGGGAATGACACGGTGAGCTTGGAGCAAGACTCGCGGGTGGCCGAGAATAATGTGAATGCAGATAGCAGCTCCTCAGTTCAGCTGGGGCCAGGTGACAGACAGACTCGGGTGGCTCATATTCCAGCATCTCAGCCTTGGGCTCAGAGTCCCGGGACAAGGGGCAGCCTGCAGCGAGACGGCCCTGGAGCTTTCCTGCTGGACCTGCAGAACTTTCCTGATCTCTCCAAAGCAGATATAAATGGGCAGAACCCCAATATACAGGTCACCATAGAAGTGGTGGACAGTCTGGAAGGTTCTGAGCCAGAGAAGGGAATGCGTAAAGAAAACAAGCCTGGCTGGGCAGCTCCTAACTGGAGGAACTGGTGGCAGCGTTCATCATCCTCGTCCTCATCTTCTGTGTCCACTCCGAAGGGGCCTGAGGAACAGGATTACCCCTACGAGAGCAACACAGAGGACAGCAACTTCCTCAAGCCACTCGGAGACTGGGAGAGAAGAGTGAAGAGTGAAGCTGGAGCGGGAAGCAGAACCCAGACTGAATACGACTACATAGACGGGGAAGGCGACTGGAGTGCTTGGTCTCCATGCAGTGTATCCTGTGGAAATGGTAACCAAAAGCGGACCAGATCGTGCGGTTATGCCTGCACTGCCACAGAGTCACGGACATGTGACATGCCCAGCTGTCCAGGGATTGAAGATGCATTCAAGACGGCAGCAACTGAAGTCAGTTTGCTCGCTGGCACTGAAGAGTTCAATGCAACAGAGCTGTTTGGAGTTGATACCGACAGCTGTGAGCGTTGGATGAACTGCAAGAGTGAGTTTCTCAAGAAATACATGAGCAAAGTAGCCACTGATCTACCCAGCTGCCCCTGCTTTTACCCAACCGAGGTGGCCTACAGCACCGCAGACGTCCACGATGCCAACACCAAACGCAACTTCCGCTGGAAGGACGCCAGCGGGCCAAAAGAGAAGCTGGAGATCTATAAACCCACAGCCCGCTATTGCATCCGCTCCATGCTCACGCTGGAATCCACAACGTTGGCGGCCCAGCACTGCTGCTACGACGACAGCATGAAACTCATCACCCGAGGCAAAGGAGCCGGTACGCCAAATCTTATCAGCACCGAGTTCTCCGCTGACCTACACTACAAAGTGGACATCCTACCCTGGATCATCTGCAAGGGGGACTGGAGCCGCTACAACCACGCTCGACCCCCCAATAATGGACAGAAATGTGCAGAAAACCCTCAGGATGAGGACTACTATAAACAGTTTGAAGAGGCCCGGGAGTTTTGAAAACTATGTACTTTCGAAAAACAGAAGCAGAACTTGTGTTGAAAGCTGGCTGTGCGTTTGAAGAGGACTTGCTATAAGAAACAGACAGCACTGTCAACAATGCGCAGAGATCTTCATATGGTCTCCCTCAAAACCTTGGGTTCAAAAGTGGAAAATCCATCATGGTTCTCTttgtattatgtatattatttggGGAATCTCTAAATTGTTTGAATTTTTTAAGGAGTAAAGGGAAAGAATGAAAGGGAAGACATATCAGGAAATCACCAATGCATCAATGAGCAACCAACAGCTAGAGTTTCCCATATCTTTGCATGCTTGTATTACACTTAACATGCAGTTGGAAACCCTTCTCCTCAGGACTCTCCAACAGGACATTGGATACAACATTCAGGTTCCTGTGTAAACATGCGTATATTTGTCTAGCTGAATGAAAAGAATTCCCATATAATGTCCTGTTGTATCATGGTTCCGTTTTTACTAAGAACAAAACAGCCCTGTGTAATCTTTGcaaagtatttattaagtcatagTTATGTGTCAGTGGTAGGGATTTGTGCATCTAGATGTATGGACAGATTTTGAGTGCTAAATAAAGAGACCATGTCACATTAAAGGTCACCATCAAACGATTCTC

Function

symbol description
ism1 Acts upstream of or within angiogenesis and hemopoiesis. Predicted to be located in extracellular region. Is expressed in several structures, including margin; midbrain hindbrain boundary; midbrain hindbrain boundary neural keel; shield; and tail bud. Orthologous to human ISM1 (isthmin 1).

GO:

id name namespace
GO:0001525 angiogenesis biological_process
GO:0016525 negative regulation of angiogenesis biological_process
GO:0030218 erythrocyte differentiation biological_process
GO:0071425 hematopoietic stem cell proliferation biological_process
GO:0035162 embryonic hemopoiesis biological_process
GO:0005576 extracellular region cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-050523-3 Acts upstream of or within angiogenesis and hemopoiesis. Predicted to be located in extracellular region. Is expressed in several structures, including margin; midbrain hindbrain boundary; midbrain hindbrain boundary neural keel; shield; and tail bud. Orthologous to human ISM1 (isthmin 1).

Ensembl:

ensembl_id ENSDARG00000020541

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00013030 False 3903 mRNA 0.41 5 34765141 34781984
TCONS_00013031 True 2732 mRNA 0.49 6 34765145 34793487

Neighbor

gene id symbol gene type direction distance location
XLOC_006767 kif16bb coding downstream 81771 34627550 ~ 34683370 (-)
XLOC_006769 BX649403.2 coding downstream 120860 34644150 ~ 34644281 (-)
XLOC_006768 BX649403.1 coding downstream 126395 34638629 ~ 34638746 (-)
XLOC_006766 flrt3 coding downstream 942591 33811842 ~ 33822550 (-)
XLOC_006765 mad2l1bp coding downstream 1064680 33695678 ~ 33700461 (-)
XLOC_006771 sptlc3 coding upstream 10756 34804243 ~ 34862484 (-)
XLOC_006772 btbd3b coding upstream 248405 35041892 ~ 35051897 (-)
XLOC_006773 CR932983.2 coding upstream 389507 35182994 ~ 35194759 (-)
XLOC_006774 NA coding upstream 411810 35205297 ~ 35289437 (-)
XLOC_006775 CU138575.1 coding upstream 577082 35370569 ~ 35370684 (-)
XLOC_006471 BX537274.2 misc downstream 24500236 10264741 ~ 10264905 (-)
XLOC_006338 rn7sk misc downstream 33938916 825904 ~ 826225 (-)
XLOC_006757 NA non-coding downstream 1301497 33452438 ~ 33463644 (-)
XLOC_006758 NA non-coding downstream 1305823 33457523 ~ 33459318 (-)
XLOC_006752 NA non-coding downstream 1463971 33261131 ~ 33301170 (-)
XLOC_006779 BX663524.1 non-coding upstream 798755 35592242 ~ 35592377 (-)
XLOC_006784 NA non-coding upstream 1131555 35925042 ~ 35925484 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000012_06380300_06388370 ISM1 coding CI01000012 null 6380300 ~ 6388991 (+)