XLOC_006772 (btbd3b)


Basic Information

Item Value
gene id XLOC_006772
gene name btbd3b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 35041892 ~ 35051897 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00013035
TCTCAGCATCTTCTCTGCATGCTTTTCCACTGCTCTGCAGGTGAACACACTCATGGTGGATGCCAAGGGAAGGAACATGAAATGTCTGACGTTCTTGTTGATGCTTCCAGAATCAGTTAAGAGCAGGTCCAGTAAAGGCTCCAAAAAGGGGAGTCCCAGCAGCTCGTCCAAGCTGCCCCCTGTGTGCTATGAGATCATCACTTTGAagaccaagaagaagaagaagatggcAGCGGAGATCTTTCCTACCAAGAAGCCGGCGTCGGCCACCACGGTGCAGCAGTACCAGCAGCAGAACTTGAACAATAATAACACTATCCAATGCTGCAACTGGCAGGGTCTCTACTCCACCATCAGGGAGAGAAATTCTGTGATGTTTAATAATGAACTGATGGCTGACGTTCACTTTGTTGTCGGTCAGTCTGGAGGGACTCAAAGGCTCCCGGGACACAAGTATGTCCTTGCTGTGGGAAGCTCTGTTTTCCATGCCATGTTCTATGGAGAGCTGGCGGAAGACACGGATGAGATTCGTATTCCTGATGTGGAACCTCCAGCTTTTCTGGCTATGCTAAAGTACATTTACTGTGACGAAATTGACTTAAGTGCCGACACCGTCTTGGCAACTTTATACGCAGCCAAAAAGTACATAGTCCCACACCTGGCACGGGCTTGCGTCAACTTCTTGGAAACAAGTTTGAGTGCCAAAAACGCGTGTATTCTTTTATCTCAAAGCTGTCTGTTCGAAGAGCCAGACCTGACACAACGCTGCTGGGAAGTCATAGACGCTCAGGCAGAGCTGGCGCTTAAATCCGATGGCTTTTGTGACATTGACTCTCAGACCTTGGAGAGCATCCTCAGACGGGAGACGCTGAATGCAAAGGAGATTGTAGTGTTTGAAGCAGCACTAAGCTGGGCAGATGCCGAGTGCCAACGGAGGGAGATGAACACCTCTATTGACAACAAACGCAAGGTGTTGGGTCAGTCCATATATCTAATACGTATCCCAACAATGGGTCTTGATGATTTCGCAAATGGTGCCGCGCAGTCAGGAGTGTTGACGTTAAACGAAACCAATGACATTTTCTTATGGTACACAGCGGCTAAGAAACCCGAACTGCAGTTTGCCAGTCAACCTCGTAAAGGCTTGACACCACAGAAGTGCCACCGCTTCCAGTCGTGCGCCTACCGCAGCAATCAATGGCGATACCGCGGACGCTGCGACAGCATTCAGTTCGCTGTTGACAAGCGGGTGTTCATCGCCGGTTTTGGGCTTTACGGCTCAAGCTGTGGGTCAGCTGAGTACACCGCCAAAATCGAGCTCAAACGGCAAGGGGTGAATTTGGGAACCAACCTCAGCAAGTACTTTTCCGATGGATCTAGTAACACCTTCCCCGTTTGGTTTGAGTATCCAGTTCAAATCGAGCCGGACACTTTCTACACTGCCAGCGTGGTTCTGGATGGAAATGAACTGAGCTATTTCGGACAAGAGGGTATGACGGAAGTGCAGTGTGGAAAGGTGACCTTTCAGTTTCAGTGCTCTTCGGACAGTACCAACGGCACAGGTGTGCAAGGCGGCCAGATCCCAGAGCTCATTTTCTATGCCTGA

Function

symbol description
btbd3b Predicted to be involved in dendrite morphogenesis. Predicted to be located in cytoplasm. Predicted to be active in cytosol. Orthologous to human BTBD3 (BTB domain containing 3).

GO:

id name namespace
GO:0048813 dendrite morphogenesis biological_process
GO:0022008 neurogenesis biological_process
GO:0005829 cytosol cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-041210-282 Predicted to be involved in dendrite morphogenesis. Predicted to be located in cytoplasm. Predicted to be active in cytosol. Orthologous to human BTBD3 (BTB domain containing 3).

Ensembl:

ensembl_id ENSDARG00000087517

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00013035 True 1606 mRNA 0.50 4 35041892 35051897

Neighbor

gene id symbol gene type direction distance location
XLOC_006771 sptlc3 coding downstream 179408 34804243 ~ 34862484 (-)
XLOC_006770 ism1 coding downstream 248405 34765141 ~ 34793487 (-)
XLOC_006767 kif16bb coding downstream 358522 34627550 ~ 34683370 (-)
XLOC_006769 BX649403.2 coding downstream 397611 34644150 ~ 34644281 (-)
XLOC_006768 BX649403.1 coding downstream 403146 34638629 ~ 34638746 (-)
XLOC_006773 CR932983.2 coding upstream 131097 35182994 ~ 35194759 (-)
XLOC_006774 NA coding upstream 153400 35205297 ~ 35289437 (-)
XLOC_006775 CU138575.1 coding upstream 318672 35370569 ~ 35370684 (-)
XLOC_006776 slx4ip coding upstream 339712 35391609 ~ 35472531 (-)
XLOC_006777 srd5a2b coding upstream 432332 35484229 ~ 35497586 (-)
XLOC_006471 BX537274.2 misc downstream 24776987 10264741 ~ 10264905 (-)
XLOC_006338 rn7sk misc downstream 34215667 825904 ~ 826225 (-)
XLOC_006757 NA non-coding downstream 1578248 33452438 ~ 33463644 (-)
XLOC_006758 NA non-coding downstream 1582574 33457523 ~ 33459318 (-)
XLOC_006752 NA non-coding downstream 1740722 33261131 ~ 33301170 (-)
XLOC_006779 BX663524.1 non-coding upstream 540345 35592242 ~ 35592377 (-)
XLOC_006784 NA non-coding upstream 873145 35925042 ~ 35925484 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000012_06208439_06217101 BTBD3B, BTBD3 coding CI01000012 null 6208439 ~ 6217914 (+)
bowfin (Amia calva) AMCG00001613 btbd3 coding CM030143.1 CM030143.1 9017866 ~ 9028794 (+)