Fish Transcriptome and Expression Database

Home /
Search /
- Gene
- RNA
- Bioproject
Expression /
Analysis /
- Coding ability prediction
- Expression count
- Visual Omics
Tools /
- Neighbor
- BLAST
Statistics /
Download /
Help

model fish

XLOC_006775 (CU138575.1)

Basic Information

Item	Value
gene id	XLOC_006775
gene name	CU138575.1
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007124.7
NCBI id	CM002897.2
chromosome length	52186027
location	35370569 ~ 35370684 (-)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00013038
TCCATAGTCATATCACCTTCCAGCCCAAGTccggttacttactgaagctaagcagggctgagcctggtgcatccctggatgggagaccacaatggaaaactaggttgctgttagaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000108942

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00013038	True	116	rRNA	0.50	1	35370569	35370684

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_006774	NA	coding	downstream	81132	35205297 ~ 35289437 (-)
XLOC_006773	CR932983.2	coding	downstream	175810	35182994 ~ 35194759 (-)
XLOC_006772	btbd3b	coding	downstream	318672	35041892 ~ 35051897 (-)
XLOC_006771	sptlc3	coding	downstream	508085	34804243 ~ 34862484 (-)
XLOC_006770	ism1	coding	downstream	577082	34765141 ~ 34793487 (-)
XLOC_006776	slx4ip	coding	upstream	20925	35391609 ~ 35472531 (-)
XLOC_006777	srd5a2b	coding	upstream	113545	35484229 ~ 35497586 (-)
XLOC_006778	memo1	coding	upstream	140209	35510893 ~ 35527697 (-)
XLOC_006779	BX663524.1	coding	upstream	221558	35592242 ~ 35592377 (-)
XLOC_006780	erlec1	coding	upstream	380006	35750690 ~ 35765028 (-)
XLOC_006471	BX537274.2	misc	downstream	25105664	10264741 ~ 10264905 (-)
XLOC_006338	rn7sk	misc	downstream	34544344	825904 ~ 826225 (-)
XLOC_006769	BX649403.2	non-coding	downstream	726288	34644150 ~ 34644281 (-)
XLOC_006768	BX649403.1	non-coding	downstream	731823	34638629 ~ 34638746 (-)
XLOC_006757	NA	non-coding	downstream	1906925	33452438 ~ 33463644 (-)
XLOC_006784	NA	non-coding	upstream	554358	35925042 ~ 35925484 (-)
XLOC_006785	BX510990.1	non-coding	upstream	591666	35962350 ~ 35962466 (-)
XLOC_006797	CR361558.1	non-coding	upstream	1028576	36399260 ~ 36399375 (-)
XLOC_006804	BX927407.1	non-coding	upstream	1217086	36587770 ~ 36612159 (-)

Expression

Co-expression Network