XLOC_006778 (memo1)


Basic Information

Item Value
gene id XLOC_006778
gene name memo1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 35510893 ~ 35527697 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00013043
GGGGCAAACCAGCCCATCCGGATAACAGAGACAAACTTGGCAGCGAGCGGCTGAACTGGTCGGATCTTTGTTCTTCACAGGCAGTCTATCAACCTCTTTATACTTAAGCGTATCGTCAGTTATATGTCTCGCGTTTATATCAAGATTATAAAAAGCACCGCTTCCCTCGACACGCAGCTTTAGCACAGCCATATAACGTTACTTTCTGAGCTAGCATATTTTCCTCAGTGTTTTTAGTTCATTCTTCCCCCCACCGACGAGGTTTTATTGGACCAAGATAGGCGGCGCGGGCACCAAGATGTCGAACCGGATGGTGTGCAGAGAAGCGAGCCACGCCGGCAGCTGGTACACGGCCTCAGGATCCCAGCTTAACGCACAACTTGAGGGCTGGTTATCTCAAGCACAATCTATAGCGGGTCCAGCCAGAGCCATAATAGCACCGCACGCCGGCTACACTTACTGCGGTGCGTGTGCCGCTCATGCCTACAAGCAGGTGGACCCCTCCATCAcTCGGAGGGTGTTCATTCTCGGCCCCTCTCACCACGTGCCGCTGTCTCGCTGTGCCCTCTCCCCCGCCGAGGTCTACAGAACGCCACTGTACGACCTGAGGATCGACCAGAAGGTTTACGCTGATCTGTGGAAAACAGGCATGTTTGAGAGGATGAGTCTGCAGACAGATGAAGATGAACACAGCATTGAGATGCATCTGCCTTATACCGCTAAAGCCATGGAGAACCATAAAGATGAGTTCAGCATCGTTCCTGTGCTGGTTGGAGCTCTGAGTGAATCTAAAGAGCAGGAATATGGCAAGCTGCTAAGCAAATACCTGGCTGACCCCTCCAATCTCTTCATCATTTCCTCTGACTTCTGCCATTGGGGTCAGCGTTTCCGTTACACCTACTACGATGAAAGCCAAGGAGAGATTTACAGATCTATCGAGCACCTTGATAAAATgGGAATGGGAATTATAGAACAATTGGACCCCATCTCCTTTAGCAATTACTTGAAGAAATATCATAATACAATTTGTGGTCGCCATCCCATCGGCGTTCTTCTAAATGCCGTGGCGGAACTGAAAAAGAACGGCATAGACATGAACTTCTCTTTCCTAAACTATGCTCAGTCGAGCCAGTGCCGAAACTGGTCGGACAGCTCTGTGAGTTACGCTGCTGGAGCTCTCATCGTTCATTGAGGTGAACTGTCCTTGGAGCCTCCTAGAAGATCGTTTCCCACCATTCCCCTACATCCTTTCCCTGCCTCTTCTATAGGAAGGACATGCGAAGTGTGTCGCAGCTGGGAATCCTCAAACATAGCCCCAATTCAGATGTAACGTTAGATACTAACCTCCTCTTCCTGCAGCTTTTCCTACAGAGGCAACTTGGATGATGCTATAGCTTGAAGTACAGCCGCAGTTTTTTTGGGGTGTTGCAAGGTCAGATTTTTTTGGTTGTGTTTCATATTTTGGATCGTTTAGTTGGGGGTTTTAAGGCAGAATTCGCTTTCGACCCACTTTAGGTGTTCGATGAGCCCTTGTACAATTGAAAAGCAAGACACacttaaagtttaaataaagaaataaaaccatCGGCATTGCACTCTTTTCGCAAGTCTACATATGTTTCACTTAATGATTTGGGAAAAAAAGGAAGTTGACTGTAACATGCCCATGTACACCCTGAGAATTGTAGTAATAGCTACTGCGATGGTcctgttgtagttttttttaaagggctaCACAATACCCACTAACCCTCCACTGTACTGGATATACCAAAAAATAGCTTTTCTTTCATCTAATCTTTTCTTGTAGTCAAATTAAAGTCTTTTTTCTGATTCTTATCTtttcttctgtttattttatttctttactaTTATTTAGCTTTAATATGCATTTGACATGTAATCTCCAAATGTGTGGAAGTATTTAGAAGTGTTTGAAGTCTAAAGGAGGTGTTTTGATTTTGGACAGTTCAGGTGGACCCCTTTCAGACGGCTATGGTGGACGAAACTTGcaaacattgaataaataaatgagcaaataaataaatgagtaaataaatccataaatgcctgca
>TCONS_00013044
ACCAAGATGTCGAACCGGATGGTGTGCAGAGAAGCGAGCCACGCCGGCAGCTGGTACACGGCCTCAGGATCCCAGCTTAACGCACAACTTGAGGGCTGGTTATCTCAAGCACAATCTATAGCGGGTCCAGCCAGAGCCATAATAGCACCGCACGCCGGCTACACTTACTGCGGTGCGTGTGCCGCTCATGCCTACAAGCAGGTGGACCCCTCCATCAcTCGGAGGGTGTTCATTCTCGGCCCCTCTCACCACGTGCCGCTGTCTCGCTGTGCCCTCTCCCCCGCCGAGGTCTACAGAACGCCACTGTACGACCTGAGGATCGACCAGAAGGTTTACGCTGATCTGTGGAAAACAGGCATGTTTGAGAGGATGAGTCTGCAGACAGATGAAGATGAACACAGCATTGAGATGCATCTGCCTTATACCGCTAAAGCCATGGAGAAGTAAATAACAACCAAATGACATCACACCCTTAGGACATCCAAGATGTGGATGACTTTTGTATTTGAGTTTTTTAGATGCAACTATGA

Function

symbol description
memo1 Is expressed in Kupffer's vesicle; central nervous system; epiphysis; tail bud; and telencephalon. Orthologous to human MEMO1 (mediator of cell motility 1).

GO: NA

KEGG:

id description
ko04812 Cytoskeleton proteins

ZFIN:

id description
ZDB-GENE-030131-5571 Is expressed in Kupffer's vesicle; central nervous system; epiphysis; tail bud; and telencephalon. Orthologous to human MEMO1 (mediator of cell motility 1).

Ensembl:

ensembl_id ENSDARG00000010823

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00013043 False 2075 mRNA 0.45 9 35510893 35527697
TCONS_00013044 True 530 lncRNA 0.53 5 35520974 35527405

Neighbor

gene id symbol gene type direction distance location
XLOC_006777 srd5a2b coding downstream 13307 35484229 ~ 35497586 (-)
XLOC_006776 slx4ip coding downstream 38362 35391609 ~ 35472531 (-)
XLOC_006775 CU138575.1 coding downstream 140209 35370569 ~ 35370684 (-)
XLOC_006774 NA coding downstream 221456 35205297 ~ 35289437 (-)
XLOC_006773 CR932983.2 coding downstream 316134 35182994 ~ 35194759 (-)
XLOC_006779 BX663524.1 coding upstream 64545 35592242 ~ 35592377 (-)
XLOC_006780 erlec1 coding upstream 222993 35750690 ~ 35765028 (-)
XLOC_006781 map3k4 coding upstream 260176 35787873 ~ 35844961 (-)
XLOC_006782 tacc3 coding upstream 352876 35880573 ~ 35892305 (-)
XLOC_006783 mycla coding upstream 376638 35904335 ~ 35908275 (-)
XLOC_006471 BX537274.2 misc downstream 25245988 10264741 ~ 10264905 (-)
XLOC_006338 rn7sk misc downstream 34684668 825904 ~ 826225 (-)
XLOC_006769 BX649403.2 non-coding downstream 866612 34644150 ~ 34644281 (-)
XLOC_006768 BX649403.1 non-coding downstream 872147 34638629 ~ 34638746 (-)
XLOC_006784 NA non-coding upstream 397345 35925042 ~ 35925484 (-)
XLOC_006785 BX510990.1 non-coding upstream 434653 35962350 ~ 35962466 (-)
XLOC_006797 CR361558.1 non-coding upstream 871563 36399260 ~ 36399375 (-)
XLOC_006804 BX927407.1 non-coding upstream 1060073 36587770 ~ 36612159 (-)

Expression


Co-expression Network