XLOC_006776 (slx4ip)


Basic Information

Item Value
gene id XLOC_006776
gene name slx4ip
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 35391609 ~ 35472531 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00013039
TGTGGGAATTACGCCGTGCTGGTGGATCTTCACATATTGGCCTTAGGCGACCAAGACAATGCCAACTGGTTCTCTCCAGCGCACAGGAAGGAAGTGGGCTCTTTGATTAGGGATGCATTGGAGCCCAGGGTGAGGCAGTTCCAAGAGGCCAGATACCAGAAGATCCAGTCCAAACCAAGGAAAGATCTCACCCCGACTGCCCCTCTTTGTCTTGAAGGTGGGAATGTTCGCCTAGCGGTGCACTTCATGAAACGTCATGTCAACCTGAGATGCATTGTCAGGCAGCACTACAGAGAGTTGCGTGTATTTCCCGAGCGTGTTGTAGTGTGTGCCAGTCCTCCAGAGAATTCCGCACTTCCCAATGGAAATCTGAACCTGGATGTGagtGAACAGAGTCAGTCAAAATACTTTTCTAACTCTGGTGAGACGGCAAATCCATTACCAATCTCCACAGCTACAAAAAGAGCTGTCCTTCAGAAGATTGCCAGAAAGACAAAAATCCAGCCCCCACGATCGCAAGATAATCAAGAGTCCAAAACAGGACAATTTCAAGCAGACAATGCAGAGAAGGGCTCTAGATCTGTCCTTCAGAGGATAACCAGACAGGCAAACGTCCAACCCCAACAGTGCCAAGATGACCAAGTGTACAAATCAGGCCAATTTCAAGCAGACAAACAAGAAAAAGGCTCTGGAGATGTCCTTCAGAAGATAACCAGACAGGCAAACATCCAACCCCAACAGTGCCAAGATGATCAAGAGTCCAAATCAGGCCAAGTTCAAGCAGACAAAGAGGAGAATGGGTCGGGAGATGTCCTACATAAGATagccAAAGAGACAAACACCCAACCTCCACAATCCCAAGATGATCAAGAATTCAAATCAGGCCAATTTCCAGCAGGCGAATCAGAGAAGGGATCTAGATCTGTCCTTCAGGAGATTGCCAGACAGGCAAACATCCAATCCCCACATTCCCAAGAAGATCAAGAGTTCAAATCAGGCCAATTTCAAGTAGCAGAGGAGTGTGTGGAAGCATGTCTCCCAGTCCCCATATCGGTCTCAAGCATTGAGTCATTGGTGGACGGGAAAGCATTGTCGTCATCTAAATTAAGTAACAATAAAGATGTCACCGAATCCTATCTTGACACCACCGGTCCAAGAAGACGCCCACGGGCCCCGAGTAGCTCAGGAGAGGACGCTGACCACCAAAAGACAAAAAGATTGCGACTTGGACAGTCTGCAGTGTCAAGCGATTCCAACAATCCCTCTTCCGGCTACGCCGCACCAGACTCTGTTTGCAGTCCCCAGCCTGAGATTTCACAGACTAACCAAAGCGGGCTGGCCACAAGTCTAAGAGGCCTATCCGTCAAGCCCGTATCCTCTGGGTCCTCTATTAGTTCCAGACCGGCCGCCAGAGAGGAAAGGAAGGGGGGTGAACCCAGAACATCCCGATTACGCCGGCTCAAGAAGTCCTGAGGGGTGCAGTGGCGTACAACGAGAGCGGATATCTGACGCCACCTCCATGGATCTTACAGTACACACTTCTACTGTAATGCTGTCTGTCAGCAGTAGTTGCACAAGAGTTCACCACACACAGCCTTTGCACATACAGTATTTCGCTTCTGCCTTCCaagtaataacacacacacacaaactgcttGTATTAGATTACAGAGAAGCTTTTAAAAGTTTGAATAAGTTCCACTAGCTTTGAAGCAACTCGTGCAAATCGTAACTTTGCtctaaacaaaaacacaaatacagtTTGCGCATTCTGCGTAAGAGTTGTATTTCAGACTAACGGGAGCCGCAGAGCACACTGTGGCTCCAAGCCCAAATCTCTGGCTCCATCCGTCTGAAATCTCCCCTCTTCCAGCTTCAGCTGAGCACATGATTGATTTCGCTGTGTTCTCACACACACCACGCTCTTTAAGCGATCAGGGCTTTTCACCGTTGGAGCCGACTGCCGTCTCTTTGCGGTTATtatttgtaaatgtgttattGCTTTTCGTAACAGCTAAAAGTCTTCTGCGGGATGATTGACAACGTTGTGGAACGCTGCAGTGCCTCTCGCGTCCGATATTTGGCTAATCACGGGTGCAGTCGACATTGATGTAGTGTGTGATGGCAGGATGATTATACGTACGGACAGAAATGCTCACATGAGAGTCACATGCTCGGTTTTCCAATCGTACTTACAAATTACTTGATGTTTATGTCATTAGGATAATAGATATGTGTCATGAATATGTTATTAAAATCGATGAATATTGTTTCGTTATAGCACCATAACAATGCAGAGTTTACAGTTACTGTACagtactttttaaagtaattttactgtaaattcTGTAATGAAAACCATTAAAGATGGAAATCGTTTGTTTGA
>TCONS_00013040
CTGGGGTCCTTACGTGACACAGGGCATGTTTCAAACCATCGGCGGGAGATTAAAGTTTCGTTCATTGCGGCTATTTTATTGTCATTCTCGACTAAATTGTGattaaacatgttaaatatttattgtacGTTACATTCAAATAACCCATGTATATTGTAAGCCAGGTCTGAGTGCCGCATAATCGCCCTTCTgctttgtgttttgaatttgacTTGTATCTGTCACAATCCAAACACATGGGGGAAATCTAACGACTGAATTTGAACAGGATGGAGCCCTCGAAATTTGTGGTCAAGTGTGGGAATTACGCCGTGCTGGTGGATCTTCACATATTGGCCTTAGGCGACCAAGACAATGCCAACTGGTTCTCTCCAGCGCACAGGAAGGAAGTGGGCTCTTTGATTAGGGATGCATTGGAGCCCAGGGTGAGGCAGTTCCAAGAGGCCAGATACCAGAAGATCCAGTCCAAACCAAGGAAAGATCTCACCCCGACTGCCCCTCTTTGTCTTGAAGGTGGGAATGTTCGCCTAGCGGTGCACTTCATGAAACGTCATGTCAACCTGAGATGCATTGTCAGGCAGCACTACAGAGAGTTGCGTGTATTTCCCGAGCGTGTTGTAGTGTGTGCCAGTCCTCCAGAGAATTCCGCACTTCCCAATGGAAATCTGAACCTGGATGTGagtGAACAGAGTCAGTCAAAATACTTTTCTAACTCTGGTGAGACGGCAAATCCATTACCAATCTCCACAGCTACAAAAAGAGCTGTCCTTCAGAAGATTGCCAGAAAGACAAAAATCCAGCCCCCACGATCGCAAGATAATCAAGAGTCCAAAACAGGACAATTTCAAGCAGACAATGCAGAGAAGGGCTCTAGATCTGTCCTTCAGAGGATAACCAGACAGGCAAACGTCCAACCCCAACAGTGCCAAGATGACCAAGTGTACAAATCAGGCCAATTTCAAGCAGACAAACAAGAAAAAGGCTCTGGAGATGTCCTTCAGAAGATAACCAGACAGGCAAACATCCAACCCCAACAGTGCCAAGATGATCAAGAGTCCAAATCAGGCCAAGTTCAAGCAGACAAAGAGGAGAATGGGTCGGGAGATGTCCTACATAAGATagccAAAGAGACAAACACCCAACCTCCACAATCCCAAGATGATCAAGAATTCAAATCAGGCCAATTTCCAGCAGGCGAATCAGAGAAGGGATCTAGATCTGTCCTTCAGGAGATTGCCAGACAGGCAAACATCCAATCCCCACATTCCCAAGAAGATCAAGAGTTCAAATCAGGCCAATTTCAAGTAGCAGAGGAGTGTGTGGAAGCATGTCTCCCAGTCCCCATATCGGTCTCAAGCATTGAGTCATTGGTGGACGGGAAAGCATTGTCGTCATCTAAATTAAGTAACAATAAAGATGTCACCGAATCCTATCTTGACACCACCGGTCCAAGAAGACGCCCACGGGCCCCGAGTAGCTCAGGAGAGGACGCTGACCACCAAAAGACAAAAAGATTGCGACTTGGACAGTCTGCAGTGTCAAGCGATTCCAACAATCCCTCTTCCGGCTACGCCGCACCAGACTCTGTTTGCAGTCCCCAGCCTGAGATTTCACAGACTAACCAAAGCGGGCTGGCCACAAGTCTAAGAGGCCTATCCGTCAAGCCCGTATCCTCTGGGTCCTCTATTAGTTCCAGACCGGCCGCCAGAGAGGAAAGGAAGGGGGGTGAACCCAGAACATCCCGATTACGCCGGCTCAAGAAGTCCTGAGGGGTGCAGTGGCGTACAACGAGAGCGGATATCTGACGCCACCTCCATGGATCTTACAGTACACACTTCTACTGTAATGCTGTCTGTCAGCAGTAGTTGCACAAGAGTTCACCACACACAGCCTTTGCACATACAGTATTTCGCTTCTGCCTTCCaagtaataacacacacacacaaactgcttGTATTAGATTACAGAGAAGCTTTTAAAAGTTTGAATAAGTTCCACTAGCTTTGAAGCAACTCGTGCAAATCGTAACTTTGCtctaaacaaaaacacaaatacagtTTGCGCATTCTGCGTAAGAGTTGTATTTCAGACTAACGGGAGCCGCAGAGCACACTGTGGCTCCAAGCCCAAATCTCTGGCTCCATCCGTCTGAAATCTCCCCTCTTCCAGCTTCAGCTGAGCACATGATTGATTTCGCTGTGTTCTCACACACACCACGCTCTTTAAGCGATCAGGGCTTTTCACCGTTGGAGCCGACTGCCGTCTCTTTGCGGTTATtatttgtaaatgtgttattGCTTTTCGTAACAGCTAAAAGTCTTCTGCGGGATGATTGACAACGTTGTGGAACGCTGCAGTGCCTCTCGCGTCCGATATTTGGCTAATCACGGGTGCAGTCGACATTGATGTAGTGTGTGATGGCAGGATGATTATACGTACGGACAGAAATGCTCACATGAGAGTCACATGCTCGGTTTTCCAATCGTACTTACAAATTACTTGATGTTTATGTCATTAGGATAATAGATATGTGTCATGAATATGTTATTAAAATCGATGAATATTGTTTCGTTATAGCACCATAACAATGCAGAGTTTACAGTTACTGTACagtactttttaaagtaattttactgtaaattcTGTAATGAAAACCATTAAAGATGGAAATCGTTTGTTTG
>TCONS_00013041
aaGTGTGGGAATTACGCCGTGCTGGTGGATCTTCACATATTGGCCTTAGGCGACCAAGACAATGCCAACTGGTTCTCTCCAGCGCACAGGAAGGAAGTGGGCTCTTTGATTAGGGATGCATTGGAGCCCAGGGTGAGGCAGTTCCAAGAGGCCAGATACCAGAAGATCCAGTCCAAACCAAGGAAAGATCTCACCCCGACTGCCCCTCTTTGTCTTGAAGGTGGACATTGAACAGAGTGATAAGACACACCGCCCGCTCGGCCCAGGCTACAGTTACGCAGCCGGGTGTGATGTGCTTCCAGGAAAACCCCGTTCGGCCCTTCCATGTGGCGACCCCCGTGAAACGCTCACACACATTCGCACAATCGCCTACGAGCCCCACCCTGACCCAGTAAGAGCGAAGGACAAGATCTTAGAGGGTGATCATTCACATCAAAGTGAGGACGGAGAGAAAATATTTCTACAAATTCCTACTCGGTCATCTAGACACCCGCTTTCCACCCGACGTTCCTGGGTTTTCACATCTAGGAGATCACTTCAGGATCGCCCATTACACACACAGTAGCCATGTGCTCAGATATCACTTGTCATACCCGGTTTTGCCACCAGAAATCGTATCTGATGTTGCCTGTTTTTCAAGCTCAATGTGTTTAGATTGTACAACCTCTTTGGCTTGTCTCGATCTAGACTGTTGTGCTGAGAGATGATTATTATTCTTTCACATGTTGAGCTGTCTGTGC

Function

symbol description
slx4ip Is expressed in eye; optic tectum; proliferative region; retina; and ventricular zone. Orthologous to human SLX4IP (SLX4 interacting protein).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1365 Is expressed in eye; optic tectum; proliferative region; retina; and ventricular zone. Orthologous to human SLX4IP (SLX4 interacting protein).

Ensembl:

ensembl_id ENSDARG00000039069

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00013039 False 2386 mRNA 0.47 10 35391609 35459928
TCONS_00013040 False 2681 mRNA 0.46 12 35391610 35472531
TCONS_00013041 True 740 processed_transcript 0.50 3 35430544 35459931

Neighbor

gene id symbol gene type direction distance location
XLOC_006775 CU138575.1 coding downstream 20925 35370569 ~ 35370684 (-)
XLOC_006774 NA coding downstream 102172 35205297 ~ 35289437 (-)
XLOC_006773 CR932983.2 coding downstream 196850 35182994 ~ 35194759 (-)
XLOC_006772 btbd3b coding downstream 339712 35041892 ~ 35051897 (-)
XLOC_006771 sptlc3 coding downstream 529125 34804243 ~ 34862484 (-)
XLOC_006777 srd5a2b coding upstream 11698 35484229 ~ 35497586 (-)
XLOC_006778 memo1 coding upstream 38362 35510893 ~ 35527697 (-)
XLOC_006779 BX663524.1 coding upstream 119711 35592242 ~ 35592377 (-)
XLOC_006780 erlec1 coding upstream 278159 35750690 ~ 35765028 (-)
XLOC_006781 map3k4 coding upstream 315342 35787873 ~ 35844961 (-)
XLOC_006471 BX537274.2 misc downstream 25126704 10264741 ~ 10264905 (-)
XLOC_006338 rn7sk misc downstream 34565384 825904 ~ 826225 (-)
XLOC_006769 BX649403.2 non-coding downstream 747328 34644150 ~ 34644281 (-)
XLOC_006768 BX649403.1 non-coding downstream 752863 34638629 ~ 34638746 (-)
XLOC_006784 NA non-coding upstream 452511 35925042 ~ 35925484 (-)
XLOC_006785 BX510990.1 non-coding upstream 489819 35962350 ~ 35962466 (-)
XLOC_006797 CR361558.1 non-coding upstream 926729 36399260 ~ 36399375 (-)
XLOC_006804 BX927407.1 non-coding upstream 1115239 36587770 ~ 36612159 (-)

Expression


Co-expression Network