Fish Transcriptome and Expression Database

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model fish

XLOC_006779 (BX663524.1)

Basic Information

Item	Value
gene id	XLOC_006779
gene name	BX663524.1
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007124.7
NCBI id	CM002897.2
chromosome length	52186027
location	35592242 ~ 35592377 (-)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00013045
GATTATACTGAACAGAATACATTGCCACatccatatcaccctgcagcccaagagcggtTACTCAGTAAAGCTAAGcaggctgagcctggtcagaacCTGGATGGGAGGTCACATGGGAaaactgggacaaaaattc

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000101781

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00013045	True	136	rRNA	0.48	1	35592242	35592377

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_006778	memo1	coding	downstream	64545	35510893 ~ 35527697 (-)
XLOC_006777	srd5a2b	coding	downstream	94656	35484229 ~ 35497586 (-)
XLOC_006776	slx4ip	coding	downstream	119711	35391609 ~ 35472531 (-)
XLOC_006775	CU138575.1	coding	downstream	221558	35370569 ~ 35370684 (-)
XLOC_006774	NA	coding	downstream	302805	35205297 ~ 35289437 (-)
XLOC_006780	erlec1	coding	upstream	158313	35750690 ~ 35765028 (-)
XLOC_006781	map3k4	coding	upstream	195496	35787873 ~ 35844961 (-)
XLOC_006782	tacc3	coding	upstream	288196	35880573 ~ 35892305 (-)
XLOC_006783	mycla	coding	upstream	311958	35904335 ~ 35908275 (-)
XLOC_006784	NA	coding	upstream	332665	35925042 ~ 35925484 (-)
XLOC_006471	BX537274.2	misc	downstream	25327337	10264741 ~ 10264905 (-)
XLOC_006338	rn7sk	misc	downstream	34766017	825904 ~ 826225 (-)
XLOC_006773	CR932983.2	non-coding	downstream	397483	35182994 ~ 35194759 (-)
XLOC_006769	BX649403.2	non-coding	downstream	947961	34644150 ~ 34644281 (-)
XLOC_006768	BX649403.1	non-coding	downstream	953496	34638629 ~ 34638746 (-)
XLOC_006785	BX510990.1	non-coding	upstream	369973	35962350 ~ 35962466 (-)
XLOC_006797	CR361558.1	non-coding	upstream	806883	36399260 ~ 36399375 (-)
XLOC_006804	BX927407.1	non-coding	upstream	995393	36587770 ~ 36612159 (-)
XLOC_006814	NA	non-coding	upstream	1403256	36995633 ~ 36997760 (-)

Expression

Co-expression Network