XLOC_006781 (map3k4)


Basic Information

Item Value
gene id XLOC_006781
gene name map3k4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 35787873 ~ 35844961 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00013049
ATCATCAGCGGCTCGCTGGAAACATGGCGTCAGTGCACACACGGGCGAGTCTCAACTCTGCAGACGGATAGAGGAAGAAAGTGTGCACAGGGACTCACACCACGCACTAGCCATTGCAAAGTCGACCTGTGTTTTCCTGGACATGTTCTGATTCATGCACGGGTGAACGGAGCGCTATTCCGTCGATTCGGCCCCGGTTATGGAGCCTCCGGATGAAATCAGgCTCAAGGACTCGTCCAAAGATGATCACCAGCAGATCACTGAGGTGGATGAGTCTTGGGACGAGCCCGGCCAGGAAGAGGAGACTCTCTACTGCACCTCCCCTCCCCAAACTCCTCGCCAGATAAAACGTTTGTCCATCAAACACCAGAGAAGCAACCCGGGGTCAAAGGGCAAAGAGAAGTCGTGTTCATCCAGCCCCTTGTCTCAGCGTGAGCGTGAGGGAGCCAGATCAGCCGAACCTCCTGAAGAGCACAGCTACAAGCAGGAAAAGAAGCAGCGCTTCAACCAGCGATCCAGCGAGCGGGACGTCAAGAAGAAGTTTGAAGGCGCCTTTATGCTGGATCCTGTTTCCAAGTCCAGTACCATCGGCTCCAGAAACATGGATCCCCGCAAGCCCTACCTGAGTCTGGGCATGATCCCCGTTCGCACCCATCGGCAAACTTCGCGCACAGACTGTCCTGCAGACCGCCTTAAGTTCTTCGAGACCCTGCGGTTGCTGCTTAAACTCACCTCCATGTCATCCAAGAAGAAGGAGAAGGAGCAGCGAGGTCTGGAGAACACCGCTTATATGGAGCAGAACAACGAGGTCATCTGGCTGGAGCTGCAGGCCTGGCACGCTCGCCGTAGTGTTAATGACCAGGACCTGTACCTGTTCACCGCTCGACAACACATACCTGACATCATCAGCGAGGTTTTGCACTTCAAAGTGGACTACAGTAGCCTGTGTGGACTCGAGAGTGGCGCCTCTGTTGAGGAGAGCAACTCCTGTCCTGGTGAAACTAATTGCATGGACGATCCATTTAGCTTTAGCACATGTTCCGCGTCCTGGCAGGAAATTGATGCCGCTGCTCCTTTTTCTTCAGGGCTGGAGTGCCGCAACCACCTGCAAAGGCAGCGAGTAGCTTTCGATCAGGTAAAACGGGTCATGTCGCTGTTAGAGTCGGTGGAGGCTTTGTACCCTTCTCTGCAAACCTTGCAGAAGGACTATGAGAAGTATGCAGCTCGGGACTTCCAGGGCAGGGTGCAGGCGCTCTGCTTATGGCTCAACATCACTCAGGACCTGAACCAGAAACTGCGCGTGATGGGCACCGTGCTGGGCCTCAGGGACCTTTCCCGCATCGGCTGGCCCATCTTTGAGATTCCATCACCTCGCTGCTCTCGAGGCAATGAGGATGATGAGGTGGATGAGGATGAATCAGAGTCCACCACTACCTTTACTGCCGAAAACGATGGGGAAGAAAGGACTTTAAGTGAGGCAACCAGTGACGGTGAGCAGTCGGCCTGCTCCCCGCCAAATTTTTCACGCCTTATGTCAGAGGAGGAGTTCCTCCCTCGGGACAACGAGACCTGCTACTGTCCTACTGCCATATACAGGCCGTTTGTGGATAAGGCACTTAAACAGATGGGACTGCGTAAATTGATCCTCAGACTGCACAAGCTGATGGACCGCTCTCTGCAGAGGGCCAGAACTGCTCTGTTGAGTCACATGCCAGCTCAAGAGTTGCCAGCGGTCCCGGGTTATTCTTTGCAGCACTCTGACTACCTTCCAGAGCTTTCTCGTCACTTTTCCGGTCCAGTAGAAGAGGAGGCAGAGTCGGGACGGGTATCATGGCAGGAGCTGATGGACATGGACCTGCCCTCATTCCGACCAGCTTTCCTGGTGCTTTGCCGTGTGCTGCTAAACGTTATTCACGAGTGCCTCAAACTGCGCCTTGAGCAAAGGCCTGCAGGAGAACCATCCCTGCTCAGCATCAAACAGTTGGTGCGCGAGTGTAAAGAGGTTCTTAAAGGAGGGCTCCTAATGAAACAGTACTACCAGTTCATGCTGCGTGGCGTCGTCACTGACCATCAGGGGCTGCAGACCAATGCCAACATTGACGAGTTTGAGGAGGATCTCCATAAAATGCTGGAGGTGTACTTTGACTACATGCGCAGCTGGATCCAGATGTTACAGCAGCTTCCTCAAGCATCCCACAGCCTGAAGAACCTGCTGGAGGAGGAATGGAACTTTACCAAAGTCATCACTCCATACATCCGAGGCGGAGAAGCCCAGTCTGGGAAGCTCTTCTGTGACATTGCTGGCATGCTGCTAAAGTCCACTGGAGAGTTTCTGGATGCTGGCCTTCAGAAGAGTGGCAATGAGTTCTGGGAGTGTGCAGAAGAGAGCACCGCTTCAGATGAGATCAGGCGTTCAGTGATTGAGACGAGTCGTTCGCTCAAAGAGCTCTTTCATGAAGCTAGAGAAAGAGCATCTAAAGCGCTGGGCTTTGCCAAGATGCTGCGTAAGGATCTGGAGATTGCTGCTGAATTCAGCTTGACCAGTGGAGTTTCTTCTCTCCTCCAAGCACTGAAGAACAAGAATTACGTCAAAgtCCAGATCCCAGGACTGGAGGAGCTGCAGGTGTTTGTCCCGTGTGATCTGACGGAGCAGCGGCTGGTCATCTTGCAGCTGTTGAATGCAGCAGCTGGAAAGGACTGCTCTAAAGACCCAGATGAGATCCCAGAAAACGAGGGCTATCTGCTGATGAGCAAACACGGGGTTGGGGACTCGAACGCTGATGGAGCTTGGGCTGAATGGGACGGCACAGTGCTCAAACTGGTGCCGCAGATGGAGACGGTGGACACATTAAGGGCCATGAAGGTGGACAATCTGTTGCTGGTGGTGATGCAGTCGGCTCATTTGGTAACCCAACGCAAAGCTTTCCAGCAATCTATGGAGGAACTTCTCTCCCTCAGCCGAGAGCAGACATCTAGCCAGCCGCTCATTGTCTGCGCTCTGGAGCAACTCAAGaatgAAGCTCTCCAACTGTGCATCAAGATCAACGATGCGATTGATCGTGTGGAGTACATGTTCATGTCCGAGTTTGAGGCTGAGGTGGAGGAGGCGGAGAAGGCCACGCTGCAGCAGTATTACAGAGAGGCCATGATCCAGGGATACAACTTTGCTTTCGAGTACCATAAAGAGGTTGTGCGGTTGATGTCCGGGGAGTTCAGACGAAGGATAGGAGAGCGTTACATCGCTTTTGCCCGCAAGTGGATGAACTTTGTCCTCACAAAGTGTGAAAGCGGAAGAGGCACTCGTCCAAGGTGGGCGACGCAGGGCTTTGATTTTCTTCAAGCGATCGAGGCTGCGTTTATATCAGCCCTGCCAGAAGATGATTTTGTGAGTCTTCAAGCTCTCATGAATGAGTGTATTGGGCATGTTATTGGCAAACCACACAGTCCAGTCAGCAGTATGTACTTTGCAGGCCCACGAAACAGCCCTCGACCTGTGAAAGTCCCCCGCTGTCACAGCGATCCTCCAAACCCGTACCTCTTCATCCCTTCCACCCAAGCAGAGGGTTTCAGCTCTCGGAGTCTGCCCTGTGATCTGCGTACCCAGTTGTGTGTCCCAGGTCCCCGTCCCACAGGGGAACACGGCCACGCCAACAAACCCTCGAATGACATCAGAGTCTCCACTGGACATGAGAATGACCGTCTGTCGTCTGTGGCTGCGGAGCTGCAGTTTAAATCCCTCAGTCGACACTCCAGCCCAACGGAGGACAGGGAAGAGCCGTCGTATCCCAAAGCAGACCCCAGCAGTTCAGCCCGTCGCAGCTGGGAGCTTCGCAACTTCATCAGCCAGTCTAAAGACACAGCGCGTCAGAGCCCCCTGGAGGCAGTGCGGCGCTCCATACAAACCTTCGATGAGAAACACTATGCGCTTATGAGACAGAGAAACATCATTGGACAGGTTTGCAACACGCCGAAGTCCTACGATAACGTGATGCATGTGGGCCTGCGCAAAGTCACCTTTAAATGGCAGAGAGGAAACAAGATCGGTGAAGGGCAGTATGGGAAGGTTTACACATGCATCAATGTGGACACTGGTGAACTAATGGCCATGAAGGAGATTCGCTTTCAGCCTAATGACCACAAAACCATCAAGGAAACGGCCGATGAGCTGAAGATCTTCGAAGGAATCAAACATCCCAACCTCGTCCGCTACTTCGGTGTTGAGTTGCACAGGGAGGAGATGTACATCTTCATGGAGTACTGTGATGAAGGCACGCTGGAGGAAGTGTCCCGTCTGGGCCTCCAGGAACACGTCATTCGCCTCTACAGCAAACAGATCACCACGGCCATCAATGTCCTGCATGAACACGGCATCGTCCACCGAGACATTAAAGGAGCGAATATCTTCCTCACGTCTTCGGGTCTGATAAAGCTGGGGGATTTTGGCTGCTCAGTGAAGCTGAAAAACAACGCTCAGACGATGCCTGGAGAGGTGAACAGCACTCTGGGAACAGCAGCATACATGGCTCCTGAGGTGATCACCAGAGCGAAGGGTGAAGGTCACGGTCGAGCTGCTGATATCTGGAGTCTCGGTTGTGTTCTCATAGAAATGGTCACTGGAAAGaGACCTTGGCACGAGTACGAGCATAACTTCCAGATCATGTATAGAGTGGGAATGGGCCACAAACCGCCCATTCCTGAAAAGCTGAGCACAGAGGGGAAGGATTTTCTGGCTCACTGTCTGGAGAGCGAACCCAAGCGGCGCTGGACCGCCAGTGCCCTGCTGGACCACCCTTTTGTCAAGGTCTGCACAGATGAAGAGTGACGAGGAGGACACGTATTCTCTTAACGTTTACAAAAATGCTAGCACTACTTCACACGACATGAGGGAGGACGAAGGAAGAAACAGACGCGCTCTGCTCGACACGAGCCCCTCTGTAACGTTAAAGCAGGGCAAGTCTTACATGTACAGCAACACGGGACAGAAATGTCATCCAGACGAGTGCGTCATGTACATACTGTAAGAATAGGGTTAGGGGGTTTTCTTTGTACAAAGCATATTGTAAAGCTAAAGTTGATGAGCCACTCTGTTGGTGATCGAGTCACAGGGAAACATGCATTCAGAATTGATTACATTAATTCAAGAGACGTTCAAAGCTTCAGAAAATGGGAGACAGAGTTTGCCTTTTGACTGAGTGTTCATTGAAGAAAGCGTACAAACCTGGGACTGAGAaggtttttaattttctttttttgttaaaatggtaTTTTTGTTTTGCCTTGCTGCAGAGCCCACTGTTAACAAGTCATATTTCAGCCTATAAGTAGTTGTGCTGCGTCGGCTCAGCCTCACGCTGGCCGATGGCGTGCCTTTATCCTGGTGTTCAAGAGCATAATCAACCAATGAGAGGGAAGAGGCCAGTCTGACTCCGCctttctgctgctgctgcactCGAACAGGTGGACAAACATTGCTCCTGCGCAGGCATCAACTGCTGGTTCTCTGCTCCTCCAACAGtgtttgcaatatttaaaaaaaagaatattaataaacagaccgtttttttaaa
>TCONS_00013050
CTTTGTCCTCACAAAGTGTGAAAGCGGAAGAGGCACTCGTCCAAGGTGGGCGACGCAGGGCTTTGATTTTCTTCAAGCGATCGAGGCTGCGTTTATATCAGCCCTGCCAGAAGATGATTTTGTGAGTCTTCAAGCTCTCATGAATGAGTGTATTGGGCATGTTATTGGCAAACCACACAGTCCAGTCAGCAGTATGTACTTTGCAGGCCCACGAAACAGCCCTCGACCTGTGAAAGTCCCCCGCTGTCACAGCGATCCTCCAAACCCGTACCTCTTCATCCCTTCCACCCAAGCAGAGGGTTTCAGAGTCTCCACTGGACATGAGAATGACCGTCTGTCGTCTGTGGCTGCGGAGCTGCAGTTTAAATCCCTCAGTCGACACTCCAGCCCAACGGAGGACAGGGAAGAGCCGTCGTATCCCAAAGCAGACCCCAGCAGTTCAGCCCGTCGCAGCTGGGAGCTTCGCAACTTCATCAGCCAGTCTAAAGACACAGCGCGTCAGAGCCCCCTGGAGGCAGTGCGGCGCTCCATACAAACCTTCGATGAGAAACACTATGCGCTTATGAGACAGAGAAACATCATTGGACAGGTTTGCAACACGCCGAAGTCCTACGATAACGTGATGCATGTGGGCCTGCGCAAAGTCACCTTTAAATGGCAGAGAGGAAACAAGATCGGTGAAGGGCAGTATGGGAAGGTTTACACATGCATCAATGTGGACACTGGTGAACTAATGGCCATGAAGGAG
>TCONS_00013051
GCCACAAAGTGATCTCGCTTTGCAGCGCAACACCAGGCGAAATTACACATTATAGTTGCAAACTTTTTTACGGGAATTGAAAACACCTACTTCAACTCAAGCATTTGCACGATTACATTTGCGTCTCTGAGGGGAAAACTCGCCGCTAATGGAAACAATCCGACCTGTGGGAAAGgCTCAAGGACTCGTCCAAAGATGATCACCAGCAGATCACTGAGGTGGATGAGTCTTGGGACGAGCCCGGCCAGGAAGAGGAGACTCTCTACTGCACCTCCCCTCCCCAAACTCCTCGCCAGATAAAACGTTTGTCCATCAAACACCAGAGAAGCAACCCGGGGTCAAAGGGCAAAG

Function

symbol description
map3k4 Predicted to enable ATP binding activity and protein serine/threonine kinase activity. Predicted to act upstream of or within protein phosphorylation. Is expressed in several structures, including mesoderm; nervous system; neural plate; primordial germ cell; and tail bud. Orthologous to human MAP3K4 (mitogen-activated protein kinase kinase kinase 4).

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0016310 phosphorylation biological_process
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0016301 kinase activity molecular_function

KEGG:

id description
ko04010 MAPK signaling pathway
ko04013 MAPK signaling pathway - fly
ko04624 Toll and Imd signaling pathway
ko04912 GnRH signaling pathway
ko01001 Protein kinases

ZFIN:

id description
ZDB-GENE-990603-4 Predicted to enable ATP binding activity and protein serine/threonine kinase activity. Predicted to act upstream of or within protein phosphorylation. Is expressed in several structures, including mesoderm; nervous system; neural plate; primordial germ cell; and tail bud. Orthologous to human MAP3K4 (mitogen-activated protein kinase kinase kinase 4).

Ensembl:

ensembl_id ENSDARG00000104835

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00013049 False 5567 mRNA 0.52 27 35787873 35844961
TCONS_00013050 False 748 mRNA 0.53 8 35801213 35808904
TCONS_00013051 True 351 processed_transcript 0.50 2 35826667 35842589

Neighbor

gene id symbol gene type direction distance location
XLOC_006780 erlec1 coding downstream 22845 35750690 ~ 35765028 (-)
XLOC_006779 BX663524.1 coding downstream 195496 35592242 ~ 35592377 (-)
XLOC_006778 memo1 coding downstream 260176 35510893 ~ 35527697 (-)
XLOC_006777 srd5a2b coding downstream 290287 35484229 ~ 35497586 (-)
XLOC_006776 slx4ip coding downstream 315342 35391609 ~ 35472531 (-)
XLOC_006782 tacc3 coding upstream 35612 35880573 ~ 35892305 (-)
XLOC_006783 mycla coding upstream 59374 35904335 ~ 35908275 (-)
XLOC_006784 NA coding upstream 80081 35925042 ~ 35925484 (-)
XLOC_006785 BX510990.1 coding upstream 117389 35962350 ~ 35962466 (-)
XLOC_006786 zgc:153911 coding upstream 129401 35974362 ~ 35976986 (-)
XLOC_006471 BX537274.2 misc downstream 25522968 10264741 ~ 10264905 (-)
XLOC_006338 rn7sk misc downstream 34961648 825904 ~ 826225 (-)
XLOC_006775 CU138575.1 non-coding downstream 417189 35370569 ~ 35370684 (-)
XLOC_006774 NA non-coding downstream 498436 35205297 ~ 35289437 (-)
XLOC_006773 CR932983.2 non-coding downstream 593114 35182994 ~ 35194759 (-)
XLOC_006769 BX649403.2 non-coding downstream 1143592 34644150 ~ 34644281 (-)
XLOC_006797 CR361558.1 non-coding upstream 554299 36399260 ~ 36399375 (-)
XLOC_006804 BX927407.1 non-coding upstream 742809 36587770 ~ 36612159 (-)
XLOC_006814 NA non-coding upstream 1150672 36995633 ~ 36997760 (-)

Expression


Co-expression Network