AMCG00001613 (btbd3)


Basic Information

Item Value
gene id AMCG00001613
gene name btbd3
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 9017866 ~ 9028794 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001613
CAGGGATTGGCTCGGCTTCTCTGGATGCTTAGCTCCATCTGCGGGGGTTACTTGTACTCTCCTGATCCATTCAACTCCTGTAGTCAGCAAAACAACCCAGAACAGAATACTGTGGCAGGCATCTCTAGCAAAATCCCAGGGAACTGTATCCTTGTGCAAAAGTAGGGCTGCTAGCTCCACTGCAGCAACACTAAATCTAGGTCTGTCAAGCAagcaagcgagagagagagagagggagcagtgTGAGAAAGCAAGCAATCGATTCATTTGATAACTCACAATAATGGAGAGCAAAGGGGACTGTCAAGCACTGGATCAAACTTAAAAAGAGTCAATAGCATTATCAGATTATAGTGATCTGCCTacgaggaagaggagagagagggggaaaaagtcaTTTTGCTCACAGAGAGCGAAATAAACCAAGACTGCAGCTGTTAACTGTTCACTGGCACGCTCCTTCGCTAGCCTTGgagtctctcctctctttccttTAATGTCTGTGCATGTCCCTCCACTGCTGAGCAGGTAAAACCACTCATGGTCGATGCCAAGGGAAGGAACATGAAATGTCTCACTTTCTTCTTGATGCTTCCAGAGTCGGTGAAGATCAGGTCGAGTAAAAGTGCAAAAAAGGGGAGCCCAACCAACTCCAAGTTGCCTCCGGTGTGCTATGAAATTATTACCTTGAAacccaagaagaagaagaagatggcAGCAGAGATTTTCCCCACGAAGAAGCCGGCCAACGCCAGCTCGGTCCAGCAGTATCAGCAGCAGAacctgaacaacaacaacacgatTCAAAGCACCAACTGGCAAGGGCTGTACCCCACTATCCGAGAGAGAAATGCGGTGATGTTTAACAATGAGCTGATGGCAGATGTTCATTTTGTGGTTGGTCCACCTGGAGGGACGCAGCGGTTGCCTGGACACAAATACGTGCTGGCCGTGGGAAGCTCTGTGTTTCATGCCATGTTTTATGGTGAACTAGCGGAGGACAAGGATGAAATTCGAATCCCAGATGTCGAACCTGCGGCTTTCTTGGCCATGCTGAAgtatatatattgtgacgaAATTGATCTGGGTGCTGATACGGTGCTGGCCACCTTGTACGCTGCCAAGAAGTACATTGTGCCTCACCTGGCTCGTGCCTGCGTCAACTTCCTGGAGACCAGCCTGAGTGCCAAGAACGCGTGTGTCCTGCTGTCACAGAGCTGCTTGTTCGAGGAGCCGGACCTCACCCAGCGGTGTTGGGAAGTCATCGACGCCCAAGCCGAGCTGGCTCTGAAGTCCGAGGGCTTCTGCGATATCGATTGCCAGACCCTGGAGAGCATCCTGAGGAGAGAGACACTCAACGCCAAGGAGATCGTGGTCTTCGAAGCGGCGCTGAACTGGGCCGAGGCCGAGTGCCAGAGGCAGGAGTTGTCCGTCAGCATCGACAACAAGCGCAAGGTCTTGGGGAAAGCGGTTTACCTCATCCGGATTCCCACCATGGCCCTGGACGACTTTGCCAACGGGGCGGCCCAATCGGGCGTGCTGACCCTCAACGAGACGAACGACATCTTCCTGTGGTATACGGCAGCCAAGAAGCCCGACCTGCAGTTTGTGAGCAAACCCAGGAAAGGCCTGGCCCCCCAGCGCTGCCACCGGTTCCAGTCCTGTGCCTATCGGAGCAACCAGTGGCGCTACCGGGGCCGCTGCGATAGCATCCAATTCGCCGTGGACAAGCGGGTGTTCATCGCCGGCTTTGGCCTGTACGGCTCGAGCTGCGGCTCGGCCGAGTACAGCGCCAAGATCGAACTGAAACGGCAGGGTGTCACCCTGGGCCAGAACTTGAGCAAGTACTTCTCTGACGGATCCAGCAACACCTTCCCCGTGTGGTTCGAGTACCCGGTGCAGATCGAGCCCGACACTTTCTACACAGCCAGCGTTGTGCTTGACGGCAATGAGCTTAGTTACTTTGGACAGGAAGGCATGACAGAGGTGCAGTGTGGGAAGGTCACTTTCCAGTTTCAGTGCTCCTCTGACAGCACCAATGGGACGGGAGTACAAGGAGGACAGATCCCAGAGCTCATATTTTATGCCTGAATTTAAGGACCCTCgtttttgtctgtttggttTTAACCCCACTCTGCTGAAAGTCTTCATCTTAGATGTCAGTCAGACCACAAACCAGTTTTGTAACATTACTGCTTTAATCAAACCAAGCATGGATATACCTGGCAAACTGCTTAATGTACTATGCATTGATCTCCGCTTTATTTATGTCAACTTGATAGCTGAGAGTGATTTTATGCAATGTGCTCTGCACCTGTTTTAAGGATtggtacattttcattcatccctcgtttataaatgaaaaaaggcatcaaatatataaatcactGATGACACCATTAATTTCACCTCCAAGAAACATACGCTGTGGTGTTCAAACTAGTCTTACAAATATTTAGCACTGGAATCTGCTTGGTCTTAGATATATCttatactgtataaatatatatatgcactcaCTCCATGGCTGCTTTGTCTTTGAAAAGATACAAATGAGATGTTCTTGCCTAGAGATGTTCATAGCTGTGTGTCAATGCAGACTCTGCCCAGTTCAAGCACATCGATGGGGTTTCCAATACCAAACGATCATGTGAGCTATAAAtatgcgtgtgtatatatatatatattttgtcacgGATTTCTTAAGATTAACCCCggaggtttaatttaaatcaagaaaatgcaACGTTGATGTTGGACACCAAAGTATTTACCATTTAAAGTAACTTTTAATAGCAACATCTTGAAATGAATGCATCTCTGTACTGCTCCACCACTGGATTTGTAGcatattttctattatataataaacagcATTGAAAGAGTAGACCACTGCAATACAGTACTCTGGCTTTAGGCTTAATTTCTACACTACAAGTCCTCTAATTGGATCTGCTAAAGGCATCAGTCTTCTGTTTTATTGAACATGGTTAAAGCTGCAGGACTGGATGGAGAATGCAATCTGGTATGATTGCAGCAGGCCTTAAAAATTGCTGTAACCTTTCCTGCTTTCTTTAAAACCGACTTTTATATTTACAAGCTTTCTTTTACCTCTTCAGATTCTTATTCCGTTCTGATCAAACATACAACCCTGCAAACACGTATGCCATCATCAAACGCAGCGAACTGGGAATTATTCTCAAATGTCACTGATTAAAGCATCAAAAAAGCTCTTGAATCACCACCATGCAGAAGACTCCTGCTCATGTCAAACTCCAATACTGTACGATGGCATGTTAGTCACATGACTGAACCCTAATGATGTGTTTACTGTTGTGACATTCATCCCTGAGGCAGTGGGGTTCTTTGTCAATATTCCCATCGCAATAACCTTTATTTAAGAGCAGAAAGGTTTTGATTGTCAGAACGGAAACATCTCTTCCTGGTAAAGCTAGATTCAGCTCTAGCCCGGTATTTGAAACACAGCACAGTCTGAAAAGCATATTTTGGCTACATAAATATGCAGGAAAGTCGcttctttattaaattaaagtggCGTCTTCCATGGTGGTTGacagtatttgtttctttcctttttagttCTCCGGAAGCACCTCTGCTCATGTTCAATgctcaattttaattttattgtggtATTGTGTGTTGTAAAAGTGCATCTTAAGTCATCAAGGCAAAACTGTCCACACAGAAACATCTGGGACTGAATGCCACCTCAGAAACTACCTGGAcaaattgtgaattgtttctTACGTGTtatctgtttaatttatattgtgttaGCAGactaacaattaaaacaacagttttATATCTATTATATATGTTACACTCCGAGAACATTCTGTTATTGATCACCAAAAGAGAGAAGACTCGAATGTCAGatcaatctgtattttttttttttttagtattgcacttttattttatctggACACATTCTTTGTCAAGCCTAATGgtccaaaaaaagaaacctatacatattgtttctttgagcaaaataaatgaagcagAACCATTCATCACATGCGTTTGCACAAAATGCACTTAGGTCATTTATCCTTGTTCAGACTGGTAGCTTGACGTGAGCAGACGCGATTTCATCTGCACCTTCTGCATATTGAAAGCAGTTTTCATTTGCGATGCTGGAGCAACAATAGCAATGTGATAATTGTTTCAACCGGGCAGTAGTCTGTTTGCTTGACCAATTTGCTGAACGTTGACCTTGGATGAGTTCCAGTGTGAAGTTGCAGCAAATGTGTTATACAGCAACATGCAAAGCCAAGGAGCACTTAACACATGATGCTTTGTCAGCCACTCTCTACCTTTTTGGGTTCAACTCCCAGTGTGAGCTGCATAAGAGTCAGCGACACCTACTCAGTGTTGCTTTAGCACTTATGTATTGCTCACACTCTTCAGAATACTACTGCAATACAATACGTCTAAGGAAGCAATATTCAAGCAGCATGCTCAGTGAGCAATTTCACCTTTCATTCAATGGCCGGACTGATCTGATTTGTTGCGCTCGATGCCCGAGTTTTCTCGGAGTGTAACATGTATGTGTGGTTGGTTTACATTCCATGTTCTGGCATGAATGGCTCAACATATCAATTTGTACAGAGAGAAACATTTGTTGATACTGCACTGATTGTacgttttttgtgtgtgttttctttgtttttaaaaacaaaataagccGCTTCTCACTTCATtcttgaggtttttttttttgtttgtttttttaaaccgaAGGCTGTTGCTAACTATCATAGAGACGAAGAAAAAGTCTAATCCTGAAGAGCTTCACAGTGAATgttattgtactgtactttggTGTAACAGTGCTGATTGACACTTGAATGTGTATGATagttgcaaattaaaataaaattggttcTGTATAACTTCAGCGTGCTTACTGTggaatcattcattaaaaatatatatatttaaaaaat

Function

symbol description
btbd3 Enables identical protein binding activity. Predicted to be involved in cerebral cortex development and dendrite morphogenesis. Predicted to be located in nucleus. Predicted to be active in cytosol.

NR:

description
PREDICTED: BTB/POZ domain-containing protein 3

GO: NA

KEGG:

id description
K10478 BTBD3_6; BTB/POZ domain-containing protein 3/6

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001613 True 4976 mRNA 0.44 4 9017866 9028794

Neighbor

gene id symbol gene type direction distance location
AMCG00001614 NA coding upstream 51128 8947413 ~ 8966738 (+)
AMCG00001610 NA coding upstream 202549 8805321 ~ 8815317 (+)
AMCG00001604 NA coding upstream 243775 8763121 ~ 8774091 (+)
AMCG00001603 memo1,LOC107654980,LOC107705412 coding upstream 259356 8748296 ~ 8758510 (+)
AMCG00001605 LOC106564822,LOC106586224 coding upstream 277844 8738472 ~ 8740022 (+)
AMCG00001617 LOC107600566,LOC107654988,LOC107662809 coding downstream 64975 9093769 ~ 9135363 (+)
AMCG00001616 ism1,LOC107662810,LOC103134171,LOC103134168 coding downstream 121223 9150017 ~ 9155016 (+)
AMCG00001618 ndufaf5 coding downstream 189835 9218629 ~ 9229998 (+)
AMCG00001626 NA coding downstream 207617 9236411 ~ 9247003 (+)
AMCG00001634 snrpb2,LOC107684252 coding downstream 938621 9967415 ~ 9970362 (+)
G159041 NA non-coding upstream 240121 8776937 ~ 8777745 (+)
G158857 NA non-coding upstream 713026 8302550 ~ 8304840 (+)
G158837 NA non-coding upstream 760677 8165773 ~ 8257189 (+)
G158823 mrpl14 non-coding upstream 915451 8101451 ~ 8102415 (+)
G158788 NA non-coding upstream 979325 8035301 ~ 8038541 (+)
G159101 NA non-coding downstream 181326 9210120 ~ 9214347 (+)
G159142 NA non-coding downstream 287317 9316111 ~ 9369910 (+)
G159170 NA non-coding downstream 834166 9862960 ~ 9863228 (+)
G159169 NA non-coding downstream 840374 9869168 ~ 9869603 (+)
G159204 NA non-coding downstream 1041136 10069930 ~ 10070334 (+)
G158836 NA other upstream 856051 8159146 ~ 8161815 (+)
G158725 kat14,LOC106584902 other upstream 1084311 7933156 ~ 7933555 (+)
G158676 NA other upstream 1270886 7746681 ~ 7746980 (+)
G158672 NA other upstream 1279976 7736515 ~ 7737890 (+)
AMCG00001550 NA other upstream 1338083 7671314 ~ 7679783 (+)
G159174 NA other downstream 884514 9913308 ~ 9914664 (+)
AMCG00001630 NA other downstream 1128940 10157734 ~ 10159826 (+)
AMCG00001643 spred2 other downstream 1626393 10655187 ~ 10677854 (+)
AMCG00001645 NA other downstream 1718695 10747489 ~ 10757858 (+)
AMCG00001691 NA other downstream 3301185 12329979 ~ 12333700 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_006772 btbd3b coding NC_007124.7 CM002897.2 35041892 ~ 35051897 (-)