RNA id: AMCG00001613


Basic Information

Item Value
RNA id AMCG00001613
length 4976
RNA type mRNA
GC content 0.44
exon number 4
gene id AMCG00001613
representative True

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 9017866 ~ 9028794 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGGGATTGGCTCGGCTTCTCTGGATGCTTAGCTCCATCTGCGGGGGTTACTTGTACTCTCCTGATCCATTCAACTCCTGTAGTCAGCAAAACAACCCAGAACAGAATACTGTGGCAGGCATCTCTAGCAAAATCCCAGGGAACTGTATCCTTGTGCAAAAGTAGGGCTGCTAGCTCCACTGCAGCAACACTAAATCTAGGTCTGTCAAGCAagcaagcgagagagagagagagggagcagtgTGAGAAAGCAAGCAATCGATTCATTTGATAACTCACAATAATGGAGAGCAAAGGGGACTGTCAAGCACTGGATCAAACTTAAAAAGAGTCAATAGCATTATCAGATTATAGTGATCTGCCTacgaggaagaggagagagagggggaaaaagtcaTTTTGCTCACAGAGAGCGAAATAAACCAAGACTGCAGCTGTTAACTGTTCACTGGCACGCTCCTTCGCTAGCCTTGgagtctctcctctctttccttTAATGTCTGTGCATGTCCCTCCACTGCTGAGCAGGTAAAACCACTCATGGTCGATGCCAAGGGAAGGAACATGAAATGTCTCACTTTCTTCTTGATGCTTCCAGAGTCGGTGAAGATCAGGTCGAGTAAAAGTGCAAAAAAGGGGAGCCCAACCAACTCCAAGTTGCCTCCGGTGTGCTATGAAATTATTACCTTGAAacccaagaagaagaagaagatggcAGCAGAGATTTTCCCCACGAAGAAGCCGGCCAACGCCAGCTCGGTCCAGCAGTATCAGCAGCAGAacctgaacaacaacaacacgatTCAAAGCACCAACTGGCAAGGGCTGTACCCCACTATCCGAGAGAGAAATGCGGTGATGTTTAACAATGAGCTGATGGCAGATGTTCATTTTGTGGTTGGTCCACCTGGAGGGACGCAGCGGTTGCCTGGACACAAATACGTGCTGGCCGTGGGAAGCTCTGTGTTTCATGCCATGTTTTATGGTGAACTAGCGGAGGACAAGGATGAAATTCGAATCCCAGATGTCGAACCTGCGGCTTTCTTGGCCATGCTGAAgtatatatattgtgacgaAATTGATCTGGGTGCTGATACGGTGCTGGCCACCTTGTACGCTGCCAAGAAGTACATTGTGCCTCACCTGGCTCGTGCCTGCGTCAACTTCCTGGAGACCAGCCTGAGTGCCAAGAACGCGTGTGTCCTGCTGTCACAGAGCTGCTTGTTCGAGGAGCCGGACCTCACCCAGCGGTGTTGGGAAGTCATCGACGCCCAAGCCGAGCTGGCTCTGAAGTCCGAGGGCTTCTGCGATATCGATTGCCAGACCCTGGAGAGCATCCTGAGGAGAGAGACACTCAACGCCAAGGAGATCGTGGTCTTCGAAGCGGCGCTGAACTGGGCCGAGGCCGAGTGCCAGAGGCAGGAGTTGTCCGTCAGCATCGACAACAAGCGCAAGGTCTTGGGGAAAGCGGTTTACCTCATCCGGATTCCCACCATGGCCCTGGACGACTTTGCCAACGGGGCGGCCCAATCGGGCGTGCTGACCCTCAACGAGACGAACGACATCTTCCTGTGGTATACGGCAGCCAAGAAGCCCGACCTGCAGTTTGTGAGCAAACCCAGGAAAGGCCTGGCCCCCCAGCGCTGCCACCGGTTCCAGTCCTGTGCCTATCGGAGCAACCAGTGGCGCTACCGGGGCCGCTGCGATAGCATCCAATTCGCCGTGGACAAGCGGGTGTTCATCGCCGGCTTTGGCCTGTACGGCTCGAGCTGCGGCTCGGCCGAGTACAGCGCCAAGATCGAACTGAAACGGCAGGGTGTCACCCTGGGCCAGAACTTGAGCAAGTACTTCTCTGACGGATCCAGCAACACCTTCCCCGTGTGGTTCGAGTACCCGGTGCAGATCGAGCCCGACACTTTCTACACAGCCAGCGTTGTGCTTGACGGCAATGAGCTTAGTTACTTTGGACAGGAAGGCATGACAGAGGTGCAGTGTGGGAAGGTCACTTTCCAGTTTCAGTGCTCCTCTGACAGCACCAATGGGACGGGAGTACAAGGAGGACAGATCCCAGAGCTCATATTTTATGCCTGAATTTAAGGACCCTCgtttttgtctgtttggttTTAACCCCACTCTGCTGAAAGTCTTCATCTTAGATGTCAGTCAGACCACAAACCAGTTTTGTAACATTACTGCTTTAATCAAACCAAGCATGGATATACCTGGCAAACTGCTTAATGTACTATGCATTGATCTCCGCTTTATTTATGTCAACTTGATAGCTGAGAGTGATTTTATGCAATGTGCTCTGCACCTGTTTTAAGGATtggtacattttcattcatccctcgtttataaatgaaaaaaggcatcaaatatataaatcactGATGACACCATTAATTTCACCTCCAAGAAACATACGCTGTGGTGTTCAAACTAGTCTTACAAATATTTAGCACTGGAATCTGCTTGGTCTTAGATATATCttatactgtataaatatatatatgcactcaCTCCATGGCTGCTTTGTCTTTGAAAAGATACAAATGAGATGTTCTTGCCTAGAGATGTTCATAGCTGTGTGTCAATGCAGACTCTGCCCAGTTCAAGCACATCGATGGGGTTTCCAATACCAAACGATCATGTGAGCTATAAAtatgcgtgtgtatatatatatatattttgtcacgGATTTCTTAAGATTAACCCCggaggtttaatttaaatcaagaaaatgcaACGTTGATGTTGGACACCAAAGTATTTACCATTTAAAGTAACTTTTAATAGCAACATCTTGAAATGAATGCATCTCTGTACTGCTCCACCACTGGATTTGTAGcatattttctattatataataaacagcATTGAAAGAGTAGACCACTGCAATACAGTACTCTGGCTTTAGGCTTAATTTCTACACTACAAGTCCTCTAATTGGATCTGCTAAAGGCATCAGTCTTCTGTTTTATTGAACATGGTTAAAGCTGCAGGACTGGATGGAGAATGCAATCTGGTATGATTGCAGCAGGCCTTAAAAATTGCTGTAACCTTTCCTGCTTTCTTTAAAACCGACTTTTATATTTACAAGCTTTCTTTTACCTCTTCAGATTCTTATTCCGTTCTGATCAAACATACAACCCTGCAAACACGTATGCCATCATCAAACGCAGCGAACTGGGAATTATTCTCAAATGTCACTGATTAAAGCATCAAAAAAGCTCTTGAATCACCACCATGCAGAAGACTCCTGCTCATGTCAAACTCCAATACTGTACGATGGCATGTTAGTCACATGACTGAACCCTAATGATGTGTTTACTGTTGTGACATTCATCCCTGAGGCAGTGGGGTTCTTTGTCAATATTCCCATCGCAATAACCTTTATTTAAGAGCAGAAAGGTTTTGATTGTCAGAACGGAAACATCTCTTCCTGGTAAAGCTAGATTCAGCTCTAGCCCGGTATTTGAAACACAGCACAGTCTGAAAAGCATATTTTGGCTACATAAATATGCAGGAAAGTCGcttctttattaaattaaagtggCGTCTTCCATGGTGGTTGacagtatttgtttctttcctttttagttCTCCGGAAGCACCTCTGCTCATGTTCAATgctcaattttaattttattgtggtATTGTGTGTTGTAAAAGTGCATCTTAAGTCATCAAGGCAAAACTGTCCACACAGAAACATCTGGGACTGAATGCCACCTCAGAAACTACCTGGAcaaattgtgaattgtttctTACGTGTtatctgtttaatttatattgtgttaGCAGactaacaattaaaacaacagttttATATCTATTATATATGTTACACTCCGAGAACATTCTGTTATTGATCACCAAAAGAGAGAAGACTCGAATGTCAGatcaatctgtattttttttttttttagtattgcacttttattttatctggACACATTCTTTGTCAAGCCTAATGgtccaaaaaaagaaacctatacatattgtttctttgagcaaaataaatgaagcagAACCATTCATCACATGCGTTTGCACAAAATGCACTTAGGTCATTTATCCTTGTTCAGACTGGTAGCTTGACGTGAGCAGACGCGATTTCATCTGCACCTTCTGCATATTGAAAGCAGTTTTCATTTGCGATGCTGGAGCAACAATAGCAATGTGATAATTGTTTCAACCGGGCAGTAGTCTGTTTGCTTGACCAATTTGCTGAACGTTGACCTTGGATGAGTTCCAGTGTGAAGTTGCAGCAAATGTGTTATACAGCAACATGCAAAGCCAAGGAGCACTTAACACATGATGCTTTGTCAGCCACTCTCTACCTTTTTGGGTTCAACTCCCAGTGTGAGCTGCATAAGAGTCAGCGACACCTACTCAGTGTTGCTTTAGCACTTATGTATTGCTCACACTCTTCAGAATACTACTGCAATACAATACGTCTAAGGAAGCAATATTCAAGCAGCATGCTCAGTGAGCAATTTCACCTTTCATTCAATGGCCGGACTGATCTGATTTGTTGCGCTCGATGCCCGAGTTTTCTCGGAGTGTAACATGTATGTGTGGTTGGTTTACATTCCATGTTCTGGCATGAATGGCTCAACATATCAATTTGTACAGAGAGAAACATTTGTTGATACTGCACTGATTGTacgttttttgtgtgtgttttctttgtttttaaaaacaaaataagccGCTTCTCACTTCATtcttgaggtttttttttttgtttgtttttttaaaccgaAGGCTGTTGCTAACTATCATAGAGACGAAGAAAAAGTCTAATCCTGAAGAGCTTCACAGTGAATgttattgtactgtactttggTGTAACAGTGCTGATTGACACTTGAATGTGTATGATagttgcaaattaaaataaaattggttcTGTATAACTTCAGCGTGCTTACTGTggaatcattcattaaaaatatatatatttaaaaaat

Function

GO: NA

KEGG:

id description
K10478 BTBD3_6; BTB/POZ domain-containing protein 3/6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU200229 lncRNA upstream 240121 8776937 ~ 8777745 (+) True G159041
TU200005 lncRNA upstream 713026 8302550 ~ 8304840 (+) True G158857
TU199985 lncRNA upstream 760677 8165773 ~ 8257189 (+) True G158837
TU199968 lncRNA upstream 915451 8101451 ~ 8102415 (+) True G158823
TU199928 lncRNA upstream 979325 8035301 ~ 8038541 (+) True G158788
TU200303 lncRNA downstream 181326 9210120 ~ 9214347 (+) True G159101
TU200359 lncRNA downstream 287317 9316111 ~ 9369910 (+) True G159142
TU200389 lncRNA downstream 834166 9862960 ~ 9863228 (+) True G159170
TU200388 lncRNA downstream 840374 9869168 ~ 9869603 (+) True G159169
TU200427 lncRNA downstream 1041136 10069930 ~ 10070334 (+) True G159204
AMCG00001614 mRNA upstream 51128 8947413 ~ 8966738 (+) True AMCG00001614
AMCG00001610 mRNA upstream 202549 8805321 ~ 8815317 (+) True AMCG00001610
AMCG00001604 mRNA upstream 243775 8763121 ~ 8774091 (+) True AMCG00001604
AMCG00001603 mRNA upstream 259356 8748296 ~ 8758510 (+) True AMCG00001603
AMCG00001605 mRNA upstream 277844 8738472 ~ 8740022 (+) True AMCG00001605
AMCG00001617 mRNA downstream 64975 9093769 ~ 9135363 (+) True AMCG00001617
AMCG00001616 mRNA downstream 121223 9150017 ~ 9155016 (+) True AMCG00001616
AMCG00001618 mRNA downstream 189835 9218629 ~ 9229998 (+) True AMCG00001618
AMCG00001626 mRNA downstream 207617 9236411 ~ 9247003 (+) True AMCG00001626
AMCG00001634 mRNA downstream 938621 9967415 ~ 9970362 (+) True AMCG00001634
TU199983 other upstream 856051 8159146 ~ 8161815 (+) True G158836
TU199853 other upstream 1084311 7933156 ~ 7933555 (+) True G158725
TU199783 other upstream 1270886 7746681 ~ 7746980 (+) True G158676
TU199779 other upstream 1279976 7736515 ~ 7737890 (+) True G158672
TU199732 other upstream 1338083 7671314 ~ 7679783 (+) False AMCG00001550
TU200393 other downstream 884514 9913308 ~ 9914664 (+) True G159174
TU201065 other downstream 3301194 12329988 ~ 12331448 (+) True AMCG00001691
TU201467 other downstream 5240821 14269615 ~ 14270190 (+) True G160026
TU201667 other downstream 6302826 15331620 ~ 15334567 (+) False AMCG00001760
TU201717 other downstream 6403543 15432337 ~ 15439031 (+) True AMCG00001762

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00013035 True 1606 mRNA 0.50 4 NC_007124.7 35041892 ~ 35051897 (-)
grasscarp (Ctenopharyngodon idella) CI01000301_01169992_01172936.mRNA False 3508 mRNA 0.42 4 CI01000301 1169811 ~ 1174877 (+)