RNA id: TU199783



Basic Information


Item Value
RNA id TU199783
length 300
RNA type TUCP
GC content 0.59
exon number 1
gene id G158676
representative True

Chromosome Information


Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 7746681 ~ 7746980 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


TGTCAAAGACTGCAGCGTGATGGTGTGTGTGGTGCTGGTGCTGACAGTGCATTATGGGTTCTCTCACCGAGCTTTCCGTTGCTGAGGCGCTTCTGCTCCACCTGGCCCTTCAGAGCGCGCACCTTCTTCAGCTTGGCCTCCTGGTTCTCTGCGTTCTCGCGCAGCCTCTGCAGCTTGTCCTTCTCCGAGGCCTGCTGCTGACGCTGGTCCTGCTGCTTCAGGTAACGCAGCCGCTGCTCCTGCAGAGGGCGACAGACACACATAGTGACTCTCTGAACGGGTCGTCCTCTGAGGCATTAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU199782 lncRNA upstream 2648 7743558 ~ 7744033 (+) True G158675
TU199780 lncRNA upstream 5625 7740626 ~ 7741056 (+) True G158673
TU199778 lncRNA upstream 11071 7735276 ~ 7735610 (+) True G158671
TU199774 lncRNA upstream 14980 7729553 ~ 7731701 (+) True G158668
TU199773 lncRNA upstream 17866 7727550 ~ 7728815 (+) True G158667
TU199784 lncRNA downstream 5422 7752402 ~ 7752770 (+) True G158677
TU199836 lncRNA downstream 152463 7899443 ~ 7901353 (+) True G158713
TU199854 lncRNA downstream 186678 7933658 ~ 7933858 (+) True G158726
TU199855 lncRNA downstream 186993 7933973 ~ 7934875 (+) True G158727
TU199856 lncRNA downstream 188094 7935074 ~ 7935289 (+) True G158728
AMCG00001560 mRNA upstream 26570 7718794 ~ 7720111 (+) True AMCG00001560
AMCG00001558 mRNA upstream 35856 7696288 ~ 7710825 (+) True AMCG00001558
AMCG00001559 mRNA upstream 58283 7686384 ~ 7688398 (+) True AMCG00001559
AMCG00001550 mRNA upstream 66904 7676085 ~ 7679777 (+) False AMCG00001550
AMCG00001548 mRNA upstream 196688 7530946 ~ 7549993 (+) True AMCG00001548
AMCG00001556 mRNA downstream 27862 7774842 ~ 7792880 (+) True AMCG00001556
AMCG00001571 mRNA downstream 107164 7854144 ~ 7859415 (+) True AMCG00001571
AMCG00001573 mRNA downstream 124173 7871153 ~ 7881358 (+) True AMCG00001573
AMCG00001572 mRNA downstream 135736 7882716 ~ 7895972 (+) True AMCG00001572
AMCG00001574 mRNA downstream 162218 7909198 ~ 7917326 (+) True AMCG00001574
TU199779 other upstream 8791 7736515 ~ 7737890 (+) True G158672
TU199730 other upstream 66898 7671314 ~ 7679783 (+) True AMCG00001550
TU199732 other upstream 66898 7671314 ~ 7679783 (+) False AMCG00001550
TU199601 other upstream 718540 7023388 ~ 7028141 (+) True G158537
TU199525 other upstream 870103 6874768 ~ 6876578 (+) True G158478
TU199853 other downstream 186176 7933156 ~ 7933555 (+) True G158725
TU199983 other downstream 412166 8159146 ~ 8161815 (+) True G158836
TU200393 other downstream 2166328 9913308 ~ 9914664 (+) True G159174
TU201065 other downstream 4583008 12329988 ~ 12331448 (+) True AMCG00001691
TU201467 other downstream 6522635 14269615 ~ 14270190 (+) True G160026

Expression Profile