AMCG00001574


Basic Information

Item Value
gene id AMCG00001574
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 7909198 ~ 7917326 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001574
GATAACCCACTCCGGGCTGCCGAGGTATCCAGCGATGCTCTCCACGACCCACTCGCTGTCCTCGGCCATGTTTGCAAGCCCCGTGTGGTGTCCCCGATGTCGGTCAGTCTGCTCCGGCGGCAGGGCGGCAgactgGCCCCCAGCGGCCGGCACGCCTGCGCCACACGCTGCTCACAGGACCCGGATGGGCTGACCCCCTCATCGGCTGCCATGGCAACTGTGACGTCACCCCTGGGGTCTGACCCGCAGATAAACCATCATGAACACCTGAACCTTGCagTCTTCAGTGTACCGGGGCCTGTTTTCCTGATCGAGATGTTTGTCCTTGGGCATGAACAGCTGCAGCTGGCAGAGGAGATACTGAAGAGTTTCTTCCCTCAATCAATAAAAGTGTATGGCTGCCTTTTCAACATCAACAGAGGCAAACCACATAACTTTGAAGTCATCGTGGATTCCTGGCCTGACTTTAAAGTCATCCTCTGCAGACCAAAACAACGGGAAGTGGCAGATCGAGAGGGAGATTTCAACATGAACAGCATCTTCTCCAGAGATGAGCAGAGTCTCAAAAAGCTGCTGGGAAGCCCTGGTGTGATCGACTGGAGCACATTCTCTTTGCTGGCAGGTGTTGACCTGTGTCACCTGGAAGTGGTGAAAGAGCTTGCGGCTTCTAAAAATACCCCTACAAGGGTGGGGAGCGTAATGCTTGTGATGACACTGGAAAACAGCAGTCAGCTCAAGGATGACCTGGACGAAAGAACTACCGAGCTCAGCCTGTCGCAGCTCTGTCCCTGTCACGCCGAGCTAGTGAACAAAAACTGGAAGTATGGCGGTGACCGTAACAGCTACAACTCGGTGGTGAGTTACATCTCCCATCACCCCAGCTTCTGCCTGCTGGATGAGAGTGGGAAACCGGTGTCCTGGGTGCTGCTGTATCGCCACAGTGCGCTGGGTTTGCTCTACACGCTGCCCGAACACCGCCGCAAGGGCTACGCAAAGCTGCTGGTGAAAGTCATGTCCAAGCACCTTCTCAGTCAAGGCTACCCTGTGTACTGCTTTAttgaagaggaaaacaaaatatcctaCCAGTTATTCAGCTCCCTAGGCTTCAATCACAAACCAGACTACAGGGCTAACTACACCTCCCATGGTGCACTTCGCTCCTGTCCAAAGTGCTTCGtggaaataaaagcacagtACTTCGGAAAACAGCAGGAGAAAATGTCACCGACTAAAGCTGTCATTGTACCCGGGAATGGAGCTGGGAATGTGGAGCAGTGCAACTGGTACGGCTGGGCCAATAAACAGTTAAATAagACTCCAGACATGACCTGTTTGCTTAAGAACATGCCTGACCCTGTAACAGCCCGTGAGAGTATCTGGCTTCCCTTCATGGAGAAGGAGCTGCAGTGCGATGAAGACACAGTGATAATTGGTCACAGCTCTGGGGCCGCCGCTGCCATGAGGTATGCCGAGACACACAAGGTGTTTGCCATTGTGTTGGTAGGGGCCTACACCTCAGACCTGGGTGAtgaaaacgagagagagagcgGGTATTTTAACCGGCCCTGGCAGTGGGAGAAGATCAAGGGAAACTGCAGGCACATTGTGCAGTTCGGTTCCACGGACGACCCCTTCCTGCCGTGGGGCGAGCAGCAGGCCGTGGCCGATGGTCTGGGGTCTCAGCTGCACAAATACACCGACCGCGGACACTTCCAGAACACGCACTTCCCGGAGCTCATCCGTGTCATTCACAAGATCAAGGAAACAGACTGAACTGGTTCGCCGCAGAAACTATATAAACACAGTCAACTACTTCaagtattgttgttttttactttcaaaTTTAAGTACGTGCCCATTTAAAGAAGTCATTGCAATCAATATACACAGCATAGAGTATGGCACGTTGGGTCCCATAATCGGATGAGTGGAGCAACTGGGTGGGATAAAGTGTGGGAccatttacatgtatatagCTGTACACTAAAGAAAATCAATGGCTTCCAATcattgcagaaaaataaa

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K07002 K07002; uncharacterized protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001574 True 2025 mRNA 0.52 12 7909198 7917326

Neighbor

gene id symbol gene type direction distance location
AMCG00001572 smek2,ppp4r3b coding upstream 13226 7882716 ~ 7895972 (+)
AMCG00001573 pnpt1,LOC106607983 coding upstream 27840 7871153 ~ 7881358 (+)
AMCG00001571 NA coding upstream 49783 7854144 ~ 7859415 (+)
AMCG00001556 LOC104967701 coding upstream 116318 7774842 ~ 7792880 (+)
AMCG00001560 NA coding upstream 189087 7718794 ~ 7720111 (+)
AMCG00001577 NA coding downstream 5442 7922768 ~ 7923494 (+)
AMCG00001576 NA coding downstream 6200 7923526 ~ 7928887 (+)
AMCG00001575 snx5,LOC106611592 coding downstream 22808 7940134 ~ 7962377 (+)
AMCG00001567 rrbp1 coding downstream 58761 7976087 ~ 7995881 (+)
AMCG00001568 NA coding downstream 89109 8006435 ~ 8017420 (+)
G158713 NA non-coding upstream 7845 7899443 ~ 7901353 (+)
G158677 NA non-coding upstream 156428 7752402 ~ 7752770 (+)
G158675 NA non-coding upstream 165165 7743558 ~ 7744033 (+)
G158673 NA non-coding upstream 168142 7740626 ~ 7741056 (+)
G158671 NA non-coding upstream 173588 7735276 ~ 7735610 (+)
G158726 NA non-coding downstream 16332 7933658 ~ 7933858 (+)
G158727 NA non-coding downstream 16647 7933973 ~ 7934875 (+)
G158728 NA non-coding downstream 17748 7935074 ~ 7935289 (+)
G158729 NA non-coding downstream 18946 7936272 ~ 7936478 (+)
G158771 NA non-coding downstream 80584 7997910 ~ 7999712 (+)
G158676 NA other upstream 162218 7746681 ~ 7746980 (+)
G158672 NA other upstream 171308 7736515 ~ 7737890 (+)
AMCG00001550 NA other upstream 229415 7671314 ~ 7679783 (+)
G158537 NA other upstream 881057 7023388 ~ 7028141 (+)
G158478 NA other upstream 1032620 6874768 ~ 6876578 (+)
G158725 kat14,LOC106584902 other downstream 15830 7933156 ~ 7933555 (+)
G158836 NA other downstream 241820 8159146 ~ 8161815 (+)
G159174 NA other downstream 1995982 9913308 ~ 9914664 (+)
AMCG00001630 NA other downstream 2240408 10157734 ~ 10159826 (+)
AMCG00001643 spred2 other downstream 2737861 10655187 ~ 10677854 (+)

Expression


Co-expression Network