AMCG00001567 (rrbp1)


Basic Information

Item Value
gene id AMCG00001567
gene name rrbp1
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 7976087 ~ 7995881 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001567
atggatatCTACGACCCCCAGACTCTTGGCTTCGTGGTCTTTGGTGGCTTCATGGTCATCTCGGCCATCGGGATTGCCTTGGTCTCCACCTTCTCCATGAAGGAGACTTCATATGAAGAAGCCTTGGCCAAACAGCGCAAGGAGCTGGAGAAGACCCAGCCTCCCAGGTccgagaagaagaagaaagacaaacccTCCGAGAAGAGGAGCCGGATCAAGAAGAAGGACGACAAGCCCAATGGCAAACTCCCGGAGCCGGAACCTACTCCTGAAGCCAGCGAGACCGTGAGCGAATCGGAGCCCGAGCCCATCTCCGTCATCCCTGCCCCCGCTGCCCCTCCAACTCCCCCCACTGCCGCCCCCATTGTCCTCACTGCCCCTGAGCCCCCTGTCGTGGCCGTTtcccgcccccccaccctggAGCACCAGCCTGCGCCCTCCCCCAAGGACAAGAAGAAGCGGGAGAAGAAGGTGGCCAAGGTGGAGCCCGCCCCCACTCTGATTGCGCCTGCAAAATCTGCCCCCGTGCTGGAGACCGTGACCAAGGAGGTTCCCATCATGGCCGTGCCTCCCGTGGGAGCCCAGACCAGCTCCCCCGTGGCCAGCTCACCCCCTCCCAAGAAGAATGAGGCGATCGTCAGCCATGATGAGGTCAAGCAGAATGGTCAGTCCAAGAAGAAGGTGGCCTCCAAGAAGAAAGTGGAGCCAAtgccGGCTGAGTCCCTGGACGCACCCTTGTACCTGCCTTACAAGACCCTGGTGTCCACTGTGAGCAGCATGGTGTTCAGTGAGGGGGAGGCCCAGCGGCTCATCGAGATCCTGACGGACAAAGCAGGCATTGTGCAGGACACCTGGCACACGGCTACCCAGAAGGGAGACCCGGTGGCGGCCCTGAAACGACAGCTGGAGGACAAGGAGAAGCAGCTGAGTGCCGAGCAGGAGGACGCAGCGGCCGCCAAGAACCGGCTGAGAGAGCTGACCAAGGAGCTAAACTCGGAAAAGTCCAAAGTGGTGTCCGTGGAGGCCCGGCTGAAGGAGCAGCTGAGCTCACGAGACCAAGAGATCACCGCCCTGCAGGCCCGCATGCAAGCCAGCTACAAAGACCATGTGGCCGAGACGCAGCAACTGAACGCCAAGGTCCAGAACCTGCAGGAGCAGCTGGAGAACGGCCCCAATGCCCAGCTGGCCCGCCTTCAGCAGGAGAACTCTATCCTCAGGGACGCCCTGAACCAGGCCACCAGCCAGACGGAGAGCAAGCAAAACGCGGAGCTGGCCAAGCTGCGCCAGGAGTGCACCAAACTGACCAAGGACCTGAGCGACAAGACCGAGGCCCTGCAGGCGGACGAGCAGCAGAAGAAGAGTCTGGAGGCCAAGGTGGCAGCCTTTGAGAAACAGGTCGGCCAGCTGCAGTCTAGCCAGGCGGAGAGTGAACGTACCCTGCAGAAGAGGCTGGATGAAGTGGGCGAGGAGCTGAGGAAGTCCCAGAGCAGCAGCAACAGTCTGCAGGCAGAGCTGGAGAAAGCCAAGCGAGAGATGGCCACCCTGACAGAGCTGCAGACCCGAGTGTCCAGTGCAGAGGCAGATGCGAAAGACAAGTGTTCCCAGGTGGAGAGCCTGCAGTCCCAGCTCAGCCAGGTGAGCTCGGAGAAGAGCCAGCTGCTGGAGAGGATCCGATCCATCGAGGCCCTGCTGGAGGCCAGCACCAACAAGCAGGTGGAGGAGAACAAGGAAAGTCAGATTGCCAGTGCAGCAGAAAATGAGCAGCTCCAAAACAACttgaaggaaaaggaaaaccagGTTTCACTGCTCGAGACAGAGATTCTGCATCTGAAGGAAGAAATAGAGcagcaaaagaacaaaaacaatGACCTCCGTGAGAAAAACTGGAAAGCAATGGATGCGCTGACCTCCGCAGAACAAATGTGCCAAGAGAAATTGAGTTCCACTAAGAAAGCCAAGGATGCTGTGGAGCAGCAGCTAGTCTCGTGGCAGACGGAGACCAGAGAGACCCTGCAGACCCTCTTCCCAGAGATCTCCTTCGACACGCAGCAGACTGGCTGGTTGCAGGAATTTAAGCACAAAGCTCAAGAGAGTCTCAGCCAGCAGACCACAGAATCGCCGGAGCTAGCGATGAAGCTAAAAGAAGCAGAAGAGTCTCGGAGCACACTACAGGCAGAGTGCGATCAGTACAGGACCGTTCTAGCCGAAACGGAAGGTATGCTGAAGGACCTTCAGAAAagtgtggaggaggaggagctcgTGTGGAAAGCCAAAATAGCAGAGTCCAAAGATGATCTTAAGAAGTTAAGGGAGCAAGTCATGCTTCTGGAGGCGCAGGTGGAGAAACAGCTAGAATCTGCGAGCTCAGAGAGCCAGAATTACTCTGAAGAAGTCGCACAGCTGAAGGACTTATTATCAGAAACTCAGAGCCAGCTGGAAATGACAAAATTAGAAGCACAAAAACAGAGTGAGGAACTGGCTTTGGTCAGACAGCACCTGAGTGAGATGAAGGAGCGAGTGCAGGACGGAGAGGCAGCTGGGTCACAGAACGCCCAGACAGAACTGCAGCCCAGCAAGttaCAATCTCAGCTCCAGGAAACTGTAGAAAAATTAGAGAACGAACAAACTGTAAGGCAGCAGCTGTCAGAAGAGTTCGAACAGGCCCAGAAGTCTGTGTTAGATCTGCAGGCAGAGCTGGAATCACTGAGAGCTGCTGGAGACTCCCCCGTCACCGACACAGACGATGCAAGTCAGTTAAAGGATAGGCTTGATAAGGAGAAGAAGCTAACCAAGGATCTGGGACAGGCTGCCACCaaactgcagcagctcctcaaGACCACCCAGGAGCAACTGGCCAAGGAGAAAGAAACCGTGAAGAAACTGCAGGACCAGCTTCAGGGACAGGATGAAAACGACGGCTTGAAGGAAGGGACTTCTGTCTGAGACTGAGAAAAAACGAAGACACTACAGAATTTGCCAAAATGCCTTAGTTATCGTAGTTATGCATTCCATGGCTGTATGCTCGCTCTTGTACTGTAGTTCATGTAAAAAAGAAAGTTAGAAACATTTCAATGCGAGAGAGAGCTGCAGCTCCATGCCTtcgtttgtgtttttcatgtttcgtttgtatttttcatttttgtcaaGACATTCCATCAACAAGCTTTTGGCTGTCAAAACGTACCCATTCAGTCTTAAGTTCACAGAACGCCTAAAAGTTCAGTGTTAAAGAAAAGGGAAAccatgtactttttaaatgtacatcaaatagtgcaatgttttgttttgttattgtcaaAGAGGTTGGAAAGGTAGGAATGTTTAAGGTACACGGATGCAATATAAAGTGCCTCTACTTCTGTAGCTGGCTGTCAAACACCAATGTGTGAGTTTGATAAAGAATAAACTACAATGCAGCCACCCCTTCGTTCttggttgatttatttaacttggttttgaatgttttattcccattttacaaattcagcaGTGATGTAATGAGGCAGAAGTTTCAAAATCAAATGCACACTGCAggatcattttg

Function

symbol description
rrbp1 Enables RNA binding activity. Involved in osteoblast differentiation. Located in endoplasmic reticulum.

NR:

description
PREDICTED: ribosome-binding protein 1 isoform X2

GO: NA

KEGG:

id description
K14000 RRBP1; ribosome-binding protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001567 True 3544 mRNA 0.53 22 7976087 7995881

Neighbor

gene id symbol gene type direction distance location
AMCG00001575 snx5,LOC106611592 coding upstream 13710 7940134 ~ 7962377 (+)
AMCG00001576 NA coding upstream 47200 7923526 ~ 7928887 (+)
AMCG00001577 NA coding upstream 52593 7922768 ~ 7923494 (+)
AMCG00001574 NA coding upstream 58761 7909198 ~ 7917326 (+)
AMCG00001572 smek2,ppp4r3b coding upstream 80115 7882716 ~ 7895972 (+)
AMCG00001568 NA coding downstream 10554 8006435 ~ 8017420 (+)
AMCG00001591 LOC106565008,LOC103477211,LOC107375568,LOC106929419,LOC107676389 coding downstream 57602 8053483 ~ 8094300 (+)
AMCG00001592 LOC105910181 coding downstream 98751 8094632 ~ 8099017 (+)
AMCG00001590 tmem63a,LOC108442067,LOC108271057 coding downstream 128123 8124004 ~ 8143882 (+)
AMCG00001589 NA coding downstream 154252 8150133 ~ 8154210 (+)
G158729 NA non-coding upstream 39609 7936272 ~ 7936478 (+)
G158728 NA non-coding upstream 40798 7935074 ~ 7935289 (+)
G158727 NA non-coding upstream 41212 7933973 ~ 7934875 (+)
G158726 NA non-coding upstream 42229 7933658 ~ 7933858 (+)
G158713 NA non-coding upstream 74734 7899443 ~ 7901353 (+)
G158771 NA non-coding downstream 2029 7997910 ~ 7999712 (+)
G158788 NA non-coding downstream 39420 8035301 ~ 8038541 (+)
G158823 mrpl14 non-coding downstream 105570 8101451 ~ 8102415 (+)
G158837 NA non-coding downstream 169892 8165773 ~ 8257189 (+)
G158857 NA non-coding downstream 306669 8302550 ~ 8304840 (+)
G158725 kat14,LOC106584902 other upstream 42532 7933156 ~ 7933555 (+)
G158676 NA other upstream 229107 7746681 ~ 7746980 (+)
G158672 NA other upstream 238197 7736515 ~ 7737890 (+)
AMCG00001550 NA other upstream 296304 7671314 ~ 7679783 (+)
G158537 NA other upstream 947946 7023388 ~ 7028141 (+)
G158836 NA other downstream 163265 8159146 ~ 8161815 (+)
G159174 NA other downstream 1917427 9913308 ~ 9914664 (+)
AMCG00001630 NA other downstream 2161853 10157734 ~ 10159826 (+)
AMCG00001643 spred2 other downstream 2659306 10655187 ~ 10677854 (+)
AMCG00001645 NA other downstream 2751608 10747489 ~ 10757858 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) LOC110499553 LOC106589909 misc NC_048584.1 CM023238.2 40357234 ~ 40399083 (-)