AMCG00001589


Basic Information

Item Value
gene id AMCG00001589
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 8150133 ~ 8154210 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001589
gcagggggtactccaggaccggatTGAAAAACCCAGGCCTACTGGAAGGTGTTGCGTGGGTTTTTCCAGGTGCGACCGCTAGGTGGCGACAGTCTCAAGTGTCTCCCAGAGGAATGACAGCGGAGTCAGAGTCACGCCGTCTCTCCAGCGACGTGGAAGGGAGCCTTATCTATACACAGCCATCCCACTGGAAGACAACCCAAAGGCTGCCCTTTTGGGGGAAACCCGAAATGCGCTGTCACTAAAGTCAGCATTTCGTGGGGAAGTAGCAGAGACGAGACGAGGCAGTTTGACCAGTCGCTGGGGGAGCTGTGGTTAAGGGAGCCATGGACGGGGCGCTCTCGGTGGTTTTAATCTGTGCAGCAATGTTCCTGGGCTGCTTCCTGCTGGGGCTGATCCCCCTCATGATCAAACTGTCGGAGCAAAAGCTGCAGTTTGTGAGCGTCCTGGGCGCTGGCCTGCTGTGTGGAACCGCTCTGGCCATCATCATTCCCGAGGGGGTGGAGCTGCTGGAGGACTCGTGGAAAGCCGCCACGCCCCCCTGCCTACCGGACGGGGCGAAAGACAACAACAGCGAGGCCAGTCCATCCCCAGCCGCCGAGGCGCAGAAGGGCCTCCCCCCACACTTCTTCATCGGCATGTCTCTGGTAGTGGGGTTCGTCCTCATGTTTGTCGTGGACCAGGTCGGCAGCTACTTCTCCTTACATGATCCACGGACTGGCATGTCAAACAGCACCAGTATCACGGCCACTGTGGGCCTGGTCATCCATGCTGCAGCTGACGGGGTGGCGCTGGGGGCAGCAGTGGCTTCATCTCAGGTCTCCATTCAAGTCATCGTCTTCTTTGCCGTGATTCTGCACAAGGCCCCCGCCGCATTCGGACTGGTCTCCTTCCTGATGCACGCCGGCCTGGAGAAGAGACAAATCCAGATGCACCTGCTTGCCTTCTCCATAGCTGCCCCGTTGCTGGCCATCACCACGTACTTCATTCTGAGCGTGACGGGCGGCTCTTACGCACACAAGCTGAGCGCCACTGGGGTGGGAATGCTCTTCTCGGCCGGGACTTTCCTGTACGTGGCCACCGTCCACGTCCTACCGGAGATCAGCAGCAGGGGGCAGCAGCGATCctcccacctccaccaccaccctGGCACCGGGGCCTACCAGCAGGGGGGGCTCAGCTTCCTCGAGAGCCTCACTCTCGTCGTAGGGGCGGGGCTTCCGGTGCTGCTGTCTCTGGGACTCCGTGATGACTAGACAGGGTTGGCCATGTTAGTTCGGCCACTGCTCAATTCGGCTGCCATCTACAGCACTACGCCGTATGCAATGCGATTAAGAAATAATGTGAGACTTGATTGCGGTGTATGAAGGAAACCGCCactggccaatgttttttgttctgctttatttttcaggtaCAGTAGTTCAGGTATGAGATCTGTGAGATGTATGTTTGAGAGACTTGAGGAACCATTTTGGAATTTGTGCTCACGGTACGGTCTACTTGCCCCCGATTTTGGTGTTATTTTGGttaattgtttttccttcacCCAGGGATGTGCTAAGCTTTCAAATTTTGCTTAATAAGGGGGCAGGTTTCCTTAACATATAGAtaactttttgttgtttatatcaAACACGTGTGTGTACTTCCAAGCCTTTTCAAAATGCAGATTTCACTTTCAGCTGCGACTGTGGAATCTTGacttcttcattcttttttGGGGTACTTTAGGATTCTAGTGGAGTTTACATTGAAGACGGACTTAAACATTTACTCAATTACAGTAAAGCATAGCGGCTACGCAAGGTGAGCCCTGCAACGCGACGGCTATTTTCCATTAACATTGCATaatcaacaattaaacaatactaCGGTACAAAAAGAACGCTTGGAAATAGTGTTTGATTAACTACAGTTATTTTGCTGACATGCTCAAGTCGCAGTGCTGCACATATgacataaaatgtgtgtgaggCATTCACTGATGGCATTGGATTATTtgtgaattaattgttttccctTCATGGCGTAGCATTGTGTGTAGCTCTACCGTTTGCTCTGGAGGAACATTGTTGGATTGCTTTCGACGGTTCTATGAAAGGTGTATGAATGTTccagaaaagtaaaaataacatgtCAAATCTAAATATGCTACTGAGCTAATAAGGCCCATCCTTAAAATAATTCTTACCTCACACCTTGAGGCATGGCTGCTCCTCCATTCTCTGATTCTGGTACTAAAAAAGGAGTGGGGACATGTATACTGGAGGTAGTCTACGCCTGGTAAGATGACATTCCTAAAATAccttattttgaattgtatccGTGTCATTTTCCCacttgtaaatataataaattgttcCAAGAAGATATTTG

Function

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0030001 metal ion transport biological_process
GO:0016020 membrane cellular_component
GO:0046873 metal ion transmembrane transporter activity molecular_function

KEGG:

id description
K14715 SLC39A9, ZIP9; solute carrier family 39 (zinc transporter), member 9

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001589 True 2379 mRNA 0.51 7 8150133 8154210

Neighbor

gene id symbol gene type direction distance location
AMCG00001590 tmem63a,LOC108442067,LOC108271057 coding upstream 6251 8124004 ~ 8143882 (+)
AMCG00001592 LOC105910181 coding upstream 51116 8094632 ~ 8099017 (+)
AMCG00001591 LOC106565008,LOC103477211,LOC107375568,LOC106929419,LOC107676389 coding upstream 55833 8053483 ~ 8094300 (+)
AMCG00001568 NA coding upstream 132713 8006435 ~ 8017420 (+)
AMCG00001567 rrbp1 coding upstream 154252 7976087 ~ 7995881 (+)
AMCG00001582 b3galnt2,LOC107730378 coding downstream 55090 8209300 ~ 8215770 (+)
AMCG00001587 arid4b coding downstream 119454 8273664 ~ 8302470 (+)
AMCG00001586 NA coding downstream 151655 8305865 ~ 8309732 (+)
AMCG00001588 tomm20,LOC103383373,LOC100703030,LOC103375291 coding downstream 157317 8311527 ~ 8315352 (+)
AMCG00001585 irf2bp2,LOC104918200 coding downstream 220075 8374285 ~ 8377410 (+)
G158823 mrpl14 non-coding upstream 47718 8101451 ~ 8102415 (+)
G158788 NA non-coding upstream 111592 8035301 ~ 8038541 (+)
G158771 NA non-coding upstream 150421 7997910 ~ 7999712 (+)
G158729 NA non-coding upstream 213655 7936272 ~ 7936478 (+)
G158728 NA non-coding upstream 214844 7935074 ~ 7935289 (+)
G158837 NA non-coding downstream 11563 8165773 ~ 8257189 (+)
G158857 NA non-coding downstream 148340 8302550 ~ 8304840 (+)
G159041 NA non-coding downstream 622727 8776937 ~ 8777745 (+)
G159101 NA non-coding downstream 1055910 9210120 ~ 9214347 (+)
G159142 NA non-coding downstream 1161901 9316111 ~ 9369910 (+)
G158725 kat14,LOC106584902 other upstream 216578 7933156 ~ 7933555 (+)
G158676 NA other upstream 403153 7746681 ~ 7746980 (+)
G158672 NA other upstream 412243 7736515 ~ 7737890 (+)
AMCG00001550 NA other upstream 470350 7671314 ~ 7679783 (+)
G158537 NA other upstream 1121992 7023388 ~ 7028141 (+)
G158836 NA other downstream 4936 8159146 ~ 8161815 (+)
G159174 NA other downstream 1759098 9913308 ~ 9914664 (+)
AMCG00001630 NA other downstream 2003524 10157734 ~ 10159826 (+)
AMCG00001643 spred2 other downstream 2500977 10655187 ~ 10677854 (+)
AMCG00001645 NA other downstream 2593279 10747489 ~ 10757858 (+)

Expression


Co-expression Network