AMCG00001592 (LOC105910181)


Basic Information

Item Value
gene id AMCG00001592
gene name LOC105910181
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 8094632 ~ 8099017 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001592
CGTTTTTCCGGTGACGATATTTCCGGCAAcaacagctgtgtgtgttgaaCAAAATGGAGGTGCTTGTGCGGGATCTGTGTCTTCATACTTCTAGTTTTTGTCTTTCTCCGGGAGCTTCAGTCGGGGATTTAGTCCGTGTGTTTTCAGAAAAGAAGgGCATCCCGGTGACTGACTTCTACGTCAAAAGCAATGGACGGCTGGCTGGGCAGGATGAGGGGCTGCAGGCTGGAGTGGTGTATCGGCTGGAGCCTCGGCTCTGCGGGGGCAAAGGAGGGTTTGGGTCTATGCTGCGAGCTCTGGGGGCGCAGATCGAGAAGACAACGAACCGAGAGGCCTGCAGGGATCTGAGCGGGAGGCGACTTCGAGATGTTAACCATGAGAAAGAGATGGCCGATTGGCTGAAGAAGCAGGCGGAACGCGAGGCCGAGAAGGAGCAGCGCCGTCTGGAGCGGCTGAAGCGCAAACTGGCCGAGCCCAAGCACTATTTCACAGACCCCAATTACGAGCAGCAGTGCCACGAGCTGTCAGAGCGCCTGGAGGACTCTGTGCTGAAAGGTATGCAGGCATCGTCTAGTGGAATGGTCGTGGCTGAAGAAGGACCCAGCAGGAAACGCCCCACTCGCAGTGCGGAACAGAAGTCGAAGGACAAGAAGAAGTGTTTCTGGACGGGGGTGGATGGACTGGAGGAAATGAGCAGTTCCGAAGAGGACAGTAACACGAGTGAGGAAGAGGACTCGGACTCCCCCTCTGGGGTGAGCTCAGGGGAGCTGGGCTGCCCAGCACAGAGAGCACGGGCCCCGGCCAGGGCTGAGGCACAGGGCAGCCCTGGAACTTCCTCCAGTGCCAGTTCAGGACCCGGCTCGCCGCAGAGGAGCGCtgtggagcagcagcagcaggaggtgGCGGCAGTGGCGGCTGTGCCTATGCCTGTAGTGCAGACAGAGACCACCCAGACGCACACACCTGAGGGCACCAAGACGGGCACCAAGCCCTGCACTGAGACAGAGCAGGCCCCCGCTGAAGAGGCTAAAGAGACGAGTCCTGCTAATGCTGCAGACACACAACGCGCGTGCTCACCTGTGCAGCCTGTGGCTGAGGGGCCCCTGGACCTGCTGGCTTTCCACAGTGTGGCGGAGCTGGAAGGGCTGGGGCTGGACAGGCTGAAGGCCGAGTTGATGGGCCTGGGGCTGAAGTGTGGCGGCACCCTgcaggagagagcagccagGCTGTTCTCAGTCAGGGGGCGGACCAAGGACCAGATCGACCCGGTCCTGTTCGCCAAATCCACcaaaggaaagaagaaataGACTGGCGTTTGAAAGCACCGGTGTGAAAATCAGTTTGTTGGATGTACACTGCAAAAACCACCAACTCTTCAAAGGTGACCTCTCCAAgacaaaactatatttttccAATGAAACATTATTGCAGGTTCAGTATCTGACTTatgttaaaattgttttaaagacaTTGGGTGTAAAATTCCATTGTAAATAGGATTTAAAGAGTAATCTGAGAAACCTTGTGATTGCATATAACTTGTAAACTCACAGCCAGACTTCAAAAGTGACGGGAATTATTTACTAATGTAATTGTACATCTGGTGTGCATATGTCAGCCATtgcatatacaataatattcaAAATGGTATGCATATGCAGGTCCTTGAtctgtttttggtttaaaaatgttCCAAGGTTGATGTAAATGCTCTATTAAGTGTCAGTGCTTCATAGAATGCAAGAGCAAAGCCTTTTGTATGGGCTTTTTACCAGAAATGATAGAACTTGTAATTCTGTAAGCTtgagatttctttattttataattggaCTTGTATCTAATTTTCcactgccatgtttttttaaataaac

Function

NR:

description
PREDICTED: protein SDE2 homolog, partial

GO: NA

KEGG:

id description
K25059 SDE2; replication stress response regulator SDE2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001592 True 1871 mRNA 0.52 7 8094632 8099017

Neighbor

gene id symbol gene type direction distance location
AMCG00001591 LOC106565008,LOC103477211,LOC107375568,LOC106929419,LOC107676389 coding upstream 332 8053483 ~ 8094300 (+)
AMCG00001568 NA coding upstream 77212 8006435 ~ 8017420 (+)
AMCG00001567 rrbp1 coding upstream 98751 7976087 ~ 7995881 (+)
AMCG00001575 snx5,LOC106611592 coding upstream 132255 7940134 ~ 7962377 (+)
AMCG00001576 NA coding upstream 165745 7923526 ~ 7928887 (+)
AMCG00001590 tmem63a,LOC108442067,LOC108271057 coding downstream 24987 8124004 ~ 8143882 (+)
AMCG00001589 NA coding downstream 51116 8150133 ~ 8154210 (+)
AMCG00001582 b3galnt2,LOC107730378 coding downstream 110283 8209300 ~ 8215770 (+)
AMCG00001587 arid4b coding downstream 174647 8273664 ~ 8302470 (+)
AMCG00001586 NA coding downstream 206848 8305865 ~ 8309732 (+)
G158788 NA non-coding upstream 56091 8035301 ~ 8038541 (+)
G158771 NA non-coding upstream 94920 7997910 ~ 7999712 (+)
G158729 NA non-coding upstream 158154 7936272 ~ 7936478 (+)
G158728 NA non-coding upstream 159343 7935074 ~ 7935289 (+)
G158727 NA non-coding upstream 159757 7933973 ~ 7934875 (+)
G158823 mrpl14 non-coding downstream 2434 8101451 ~ 8102415 (+)
G158837 NA non-coding downstream 66756 8165773 ~ 8257189 (+)
G158857 NA non-coding downstream 203533 8302550 ~ 8304840 (+)
G159041 NA non-coding downstream 677920 8776937 ~ 8777745 (+)
G159101 NA non-coding downstream 1111103 9210120 ~ 9214347 (+)
G158725 kat14,LOC106584902 other upstream 161077 7933156 ~ 7933555 (+)
G158676 NA other upstream 347652 7746681 ~ 7746980 (+)
G158672 NA other upstream 356742 7736515 ~ 7737890 (+)
AMCG00001550 NA other upstream 414849 7671314 ~ 7679783 (+)
G158537 NA other upstream 1066491 7023388 ~ 7028141 (+)
G158836 NA other downstream 60129 8159146 ~ 8161815 (+)
G159174 NA other downstream 1814291 9913308 ~ 9914664 (+)
AMCG00001630 NA other downstream 2058717 10157734 ~ 10159826 (+)
AMCG00001643 spred2 other downstream 2556170 10655187 ~ 10677854 (+)
AMCG00001645 NA other downstream 2648472 10747489 ~ 10757858 (+)

Expression


Co-expression Network