AMCG00001590 (tmem63a,LOC108442067,LOC108271057)


Basic Information

Item Value
gene id AMCG00001590
gene name tmem63a,LOC108442067,LOC108271057
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 8124004 ~ 8143882 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001590
atgtatgtgtgtatatttactgCAGGTGTGAAGGATGAGGCAGTGAAGATGCTCCGTGTTCTGATTGTGACCATGGGGGTGCTGGCGGCGGAGGCCTGCACCAACTGCGGCAACTCCTCCAAGGATTACTGCTACACAGCCCGCATCCGCAGCACCGTGCTACAGGGCCTGCCCTTTGGGGGGGTGCCCACCGTGCTTGCCCTCGACTTCATGTGCTTTCTGGTCCTGCtctttgtgttttcaattttacGAAAGGTTGCCTGGGATTATGGCCGTTTAGCCTTGGTGACAGATGCTGACAGTGTGGCCTCTGCACTCCATTCGGAAACACCGGACCGATACGAGCGTCTGACATCAGTTTCCAGCTCCGTGGACTTCGACCAAAGAGACAACGGATTCTGTTCTTGGTTGACTGCCATCTTCAGAATAAAGGATGAAGAGATCCGGGAGAAGTGTGGGGGGGACGCTGTGCACTACCTGTCCTTCCAACGCCACATCATCGGCCTGCTGGTCGTGGTCGGAGTGCTGTCTGTGGGTATCGTTTTGCCGGTGAACTTCTCGGGAGACCTGCTCGAAAATAATGCCTACAGCTTTGGACGAACAACTATTGCCAACTTAAATTCTGGGGCTAACTTACTCTGGTTGCACACTTCCTTCGCCTTCCTATACCTGCTGCTGACAGTGTACAGCATGAGGAGACACACATCAAAGATGCACTACAAGGAAGATGATCTGGTGAAACggactttatttattaatgggaTTTCCAAGTACGCTGAAGAGACCCAGATAAAGCAGCATTTTGAACAAGCCTACGAGAACTGCCGGGTGCTGGAAGCTCGGCTGTGTTACAACGTGGCTAAACTGATGTCCCTCGACGGGGAGAGGAAAAAGGCAGAACGCAGCAAGAAGTTCTTCACAGACCTGATGTCAAAGGAACACATGCCCACCATGATTAACCCCAAGCCCTGCGGCCACCTCTGCTGCTGTGTCATCAAAGGCTGTGAGCAGGAGGAGGCTGTCAGCTACTACACTAAACTGGAGTCCAAGCTGAAAGAGGAGTAcaggaaagagaaggagaaagtgaATACCAAGCCGCTGGGAATGGCCTTTGTCACATTCCAGAATGAAACCATGACCGCAATCATCCTGAAGGACTTCAATGCCTGCCAGTGTCAGGGCTGCAAGTGCCGACGGGAGCCCAAGTCCTCCACCTACAGTGACACCCTGCACGTGCACAATTGGAACGTCACCTACGCCCCCGATCCACAGAACGTCTACTGGGAACACTTATCTCTGGGCGGCCTGTCCTGGTGGCTGCGCTGTTTTGTTATCAACTGCATCCTCTTCCTGCTGCTCTTCTTCCTCACCACCCCTGccatcatcatcaccaccatGGACAAGTTCAACGTCACCAAGCCCGTGGAGTATCTGAACAATCCCATCATCACCCAGTTCTTCCCCACCCTTCTGCTGTGGGCCTTTTCAGCCCTGCTGCCCACCATTGTGTACTACTCGGCCTTCTTCGAGGCCCACTGGACTAGGTCTGGGGAGAACAGGACAACGATGCACAAATGTTACACTTTCCTCATATTCATGGTCCTACTGCTGCCCTCCCTTGGACTGAGCAGcttGGATCTTTTCTTCCGCTGGCTGTTTGACAAGAAATTCTTGGCCGATGCAGCAGTTAGATTTGAgtgCGTCTTCCTCCCGGACAATGGCGCCTTCTTCGTGAATTATGTCATTGCGTCCGCCTTCATCGGAAACGCCATGGACCTGCTGCGGATTCCCGGTCTGCTCATGTACATGATCCGCCTGTGTCTGGCCAGATCGGTGGCCGAGAGACGCAACGTGAAGCGGCACCAGGCGTACGAGTTCCAGTTCGGGGCTGCCTACGCCTGGATGATGTGCGTCTTCACCGTAGTGATGACCTACAGCATCACCTGTCCCATCATCGTCCCATTCGGACTGATGTACATGCTTCTGAAGCACCTGGTGGACCGGTACAACCTCTACTACGCCTACCTGCCGGCCAAACTGGACAAAAAGATCCACTCTGGGGCTGTGAACCAGGTGGTGGCCGCCCCTATCCTCTGCCTCTTCTGGCTCCTGTTCTTCTCCACGGTCCGTACAGGCTTTGTGGCGTCCACCTCGATGTTCACCTTCGTGGTGCTCATCATCACCATCGTGGTCTGCCTTTCTCATGTCTGCTTCGGGCATTTCAAATACCTCAGCGCTCACAACTACAAGATTGACACCCAGGACACGGATATCGATGGGGTTGAAAATGGCCGGCCTGCAGGTTCCTCTCCGTCTGGGAAATCTGCAATGTACATCGCTCAGGTGCTCCAGGACCCCAACTCGGACGAGACGGGCACCGGCAGCGGGGAAGAGGATGGCCAGGGCTCCTCCCAGGATGAAGAGATGATCAATGCAGGGAACGGCATCAACGAAGCGGACTTCCACTCGGGAGAGGACAGCCTCATAGCCAACGAGGTGCACCATTAACAGACGATGCTGCGAGAGACCGAGGgaatgagagagtgagagagagagagagagagagagagggacctTAAAGTACGATATGAAAGAAGGACCAGGGGAAGTACCGATGGAAACCAACTCAACGCAACACTACACTAACAGCGCTACCAGACTCCAGGATCTTCTCTGACACAGCCCTCGCCCTCCCCGCCCATCTCTCCATGCGTCTGTGTCTTCGGTTTGTGGGGGGCCTGGTAACCACAGGGCTCTACAACCGCTACAGCCACTGTTTGGTTTTCTGCCACCGGGGAGAGGGAAGAGTTACACGCATCTCCTGTAGGTTCATTTTTCTAACGCTTGTCGGgcttgacaaaacaaaaccggAAAGAATTTTTATCCAGATAAATAAATTCCGGTGGAGGACTTTTTTTATACATCACCAATGAGgctaaataaaatcaataaatcaataaaataggTGTTCAGTAAGGTCCCCCCTTATATATTTAAG

Function

symbol description
tmem63a Predicted to enable calcium activated cation channel activity. Predicted to act upstream of or within ion transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Human ortholog(s) of this gene implicated in hypomyelinating leukodystrophy. Orthologous to human TMEM63A (transmembrane protein 63A).

NR:

description
PREDICTED: CSC1-like protein 2 isoform X2

GO: NA

KEGG:

id description
K21989 TMEM63, CSC1; calcium permeable stress-gated cation channel

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001590 True 2998 mRNA 0.53 22 8124004 8143882

Neighbor

gene id symbol gene type direction distance location
AMCG00001592 LOC105910181 coding upstream 24987 8094632 ~ 8099017 (+)
AMCG00001591 LOC106565008,LOC103477211,LOC107375568,LOC106929419,LOC107676389 coding upstream 29704 8053483 ~ 8094300 (+)
AMCG00001568 NA coding upstream 106584 8006435 ~ 8017420 (+)
AMCG00001567 rrbp1 coding upstream 128123 7976087 ~ 7995881 (+)
AMCG00001575 snx5,LOC106611592 coding upstream 161627 7940134 ~ 7962377 (+)
AMCG00001589 NA coding downstream 6251 8150133 ~ 8154210 (+)
AMCG00001582 b3galnt2,LOC107730378 coding downstream 65418 8209300 ~ 8215770 (+)
AMCG00001587 arid4b coding downstream 129782 8273664 ~ 8302470 (+)
AMCG00001586 NA coding downstream 161983 8305865 ~ 8309732 (+)
AMCG00001588 tomm20,LOC103383373,LOC100703030,LOC103375291 coding downstream 167645 8311527 ~ 8315352 (+)
G158823 mrpl14 non-coding upstream 21589 8101451 ~ 8102415 (+)
G158788 NA non-coding upstream 85463 8035301 ~ 8038541 (+)
G158771 NA non-coding upstream 124292 7997910 ~ 7999712 (+)
G158729 NA non-coding upstream 187526 7936272 ~ 7936478 (+)
G158728 NA non-coding upstream 188715 7935074 ~ 7935289 (+)
G158837 NA non-coding downstream 21891 8165773 ~ 8257189 (+)
G158857 NA non-coding downstream 158668 8302550 ~ 8304840 (+)
G159041 NA non-coding downstream 633055 8776937 ~ 8777745 (+)
G159101 NA non-coding downstream 1066238 9210120 ~ 9214347 (+)
G159142 NA non-coding downstream 1172229 9316111 ~ 9369910 (+)
G158725 kat14,LOC106584902 other upstream 190449 7933156 ~ 7933555 (+)
G158676 NA other upstream 377024 7746681 ~ 7746980 (+)
G158672 NA other upstream 386114 7736515 ~ 7737890 (+)
AMCG00001550 NA other upstream 444221 7671314 ~ 7679783 (+)
G158537 NA other upstream 1095863 7023388 ~ 7028141 (+)
G158836 NA other downstream 15264 8159146 ~ 8161815 (+)
G159174 NA other downstream 1769426 9913308 ~ 9914664 (+)
AMCG00001630 NA other downstream 2013852 10157734 ~ 10159826 (+)
AMCG00001643 spred2 other downstream 2511305 10655187 ~ 10677854 (+)
AMCG00001645 NA other downstream 2603607 10747489 ~ 10757858 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000306_01047698_01080329 TMEM63A, TMEM63B coding CI01000306 null 1047698 ~ 1082259 (+)