RNA id: TU200393


Basic Information

Item Value
RNA id TU200393
length 1357
RNA type TUCP
GC content 0.59
exon number 1
gene id G159174
representative True

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 9913308 ~ 9914664 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGACTCTGTCCTGCTCCAGAGCTTTGTGCTCGGCTTCCAGGCTGGCCTGTAGCCCTACTTGATCCTCACTGTGATTCAGCGAAGCCAACTTCCGTTTCTGCTCCTCGATCTCCAGCTCGATGGTGGACTGGCGCTGCAAGGCCGAGTGCCTACGCTCCAGCTTAGCCACAGCCTGCTCCAGAGCCTCCCTCTGCTGCTTCTCCTTGGACTGCAGGATCTCCTTCTCTTTCCTGCGCACCTTCTCCTCCTGGCGGGCCACGTTGGCCGTGAACTCGTACGTCtcctggagctgctgcagttGGTCGGCGCTGGCGCAGTAGAGGGCCAGCTGCTCTGCCTTCTCTTCAATCTCCTTCTCTATCTGGTACAAGGTGTTGTCCAGCCCGGGCAGACCCTTCTCCACAATCTCGGTGGACCTATGTTTCTCCTCTGTGATGGTGGGGAGGTGGTTCTCGGTGAGACAGTGCAGCTGGCGCTCTTTGTACTGCAGGCGCTGCTCCGCTTGCTTAATCCGCTCTTTCTCCTGGACCACATTGGCCGCATCTAGAGACCCTTTCTCCTGCGTCTCCCTCAGCAGCTCCTGGTGTTCCTCATGGCTTTGGAGGAGGTGAGCCAGAGCCTTGCGCTCGCTCAATATATCCTTCTCCAGGTGCTCTTTTTGCTGAAACAGTCCCGTCTCCAAGTGCTGAAGCTGCTCCAGCTGTTTCACCTTGAAGCTCATGTATCTCTGCTTGGCGTCCCTCACATCGTCGTGCTCCTCATCTCCATCAGGCCGGGCCTCTTTCGCCTTGAGGAGGACCCCTCTTATCTCCTCCAGGACCCTCTTCTCCCCCTCTACCCTCTGCACGTCGTCGATCTTCAGCAGGCTGATCATCTCCTGCTTCTCCCGCAGCTGCTCTTCCAGCCGGAACACCAAGCTCAGCTGGTCTCGCTCCTGCTCCTCCAGACGCCtcttctccagctccagctTGACTGCCTGCtcgtccctctccctcttcagCTTATCCAGCTCCCGGAAGATCTCCATCTTCTCTGCCCTCTCCTTCTGGTGGATCTCCTGCAGCCTCTCCTGCTCCTTCTGCACCCGGCTGTGGATCTCCTCTTCCTGCTTCTTCTTTTGCAGCTCCATCTCCTGTTGCTCCCGCAGCCGCTCCTCCTCGAAGCGCTCCTTCTCGGCCAGCAGGTCCTTCAGCCGGCTCTCGATGTCCTGGCTCCGTCTCTTGAGGCTCTCCTCCTGTTTCCGGATCCGGAGCTGCACCTGCTCGGACTCCTTGCGCTGGGACTCCACCTCCTGCTGCATGCGTTCCAGCTCCGCTTTCTCGCATTTCTGCTTCTCCTCCATCTCTTTGATCAGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU200388 lncRNA upstream 43705 9869168 ~ 9869603 (+) True G159169
TU200389 lncRNA upstream 50080 9862960 ~ 9863228 (+) True G159170
TU200359 lncRNA upstream 543398 9316111 ~ 9369910 (+) True G159142
TU200303 lncRNA upstream 698961 9210120 ~ 9214347 (+) True G159101
TU200229 lncRNA upstream 1135563 8776937 ~ 8777745 (+) True G159041
TU200427 lncRNA downstream 155266 10069930 ~ 10070334 (+) True G159204
TU200444 lncRNA downstream 243070 10157734 ~ 10159818 (+) False AMCG00001630
TU200477 lncRNA downstream 400397 10315061 ~ 10319144 (+) True G159250
TU200504 lncRNA downstream 527283 10441947 ~ 10448746 (+) True G159273
TU200526 lncRNA downstream 754512 10669176 ~ 10677854 (+) False AMCG00001643
AMCG00001626 mRNA upstream 666305 9236411 ~ 9247003 (+) True AMCG00001626
AMCG00001618 mRNA upstream 683310 9218629 ~ 9229998 (+) True AMCG00001618
AMCG00001616 mRNA upstream 758292 9150017 ~ 9155016 (+) True AMCG00001616
AMCG00001617 mRNA upstream 777945 9093769 ~ 9135363 (+) True AMCG00001617
AMCG00001613 mRNA upstream 884514 9017866 ~ 9028794 (+) True AMCG00001613
AMCG00001634 mRNA downstream 52751 9967415 ~ 9970362 (+) True AMCG00001634
AMCG00001635 mRNA downstream 56689 9971353 ~ 9972980 (+) True AMCG00001635
AMCG00001633 mRNA downstream 99559 10014223 ~ 10050694 (+) True AMCG00001633
AMCG00001631 mRNA downstream 180696 10095360 ~ 10097803 (+) True AMCG00001631
AMCG00001630 mRNA downstream 243081 10157745 ~ 10159826 (+) True AMCG00001630
TU199983 other upstream 1751493 8159146 ~ 8161815 (+) True G158836
TU199853 other upstream 1979753 7933156 ~ 7933555 (+) True G158725
TU199783 other upstream 2166328 7746681 ~ 7746980 (+) True G158676
TU199779 other upstream 2175418 7736515 ~ 7737890 (+) True G158672
TU199730 other upstream 2233525 7671314 ~ 7679783 (+) True AMCG00001550
TU201065 other downstream 2415324 12329988 ~ 12331448 (+) True AMCG00001691
TU201467 other downstream 4354951 14269615 ~ 14270190 (+) True G160026
TU201667 other downstream 5416956 15331620 ~ 15334567 (+) False AMCG00001760
TU201717 other downstream 5517673 15432337 ~ 15439031 (+) True AMCG00001762
TU202121 other downstream 6322598 16237262 ~ 16295506 (+) False AMCG00001814

Expression Profile