G159273


Basic Information

Item Value
gene id G159273
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 10441947 ~ 10448746 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU200504
atttatttatttacaacgTATACATAAACTCTCCAAGAGGGGACAATGGAAAGCAAAAACACGCACATGACTGATGTCctgttcagaaaaaaacaaaagaaagtagttggttaattaattttgtttcattttaggATTACATCACAACCCATttggtgatttgttttcatggGGAGATGAATTCACTGATGCAATAATTAAACTCACACACCTTTTGGTTTCTATGTTTGTTCCTACCAGTCTCCTTAAGACATTGCCAGCAATAGCTGATTAATCATAGTAGATGTCGATAGCTTTTCCCATCCTTCCCTGTTTACATCTGTTCAGGCCAATTCAAATATGGTGAGTAAGTGAATTAGACATGCAAATGCAAGCCTCGGGCTAGAGAGATAGAGAACATGGATGAAATCCTGGGATGGACGAGAGTCTTCCGCCTGACATAGTTATTTTAATGCTCTAAAAATCCTGCAAATAAGCCTTTTCTGTCATTTGCAGAGTAAACGTAAGGCTtcgtcattttttttcttttttcttcaaacGTAAGGAGATTTGGGGAAGAAGCCAAACTCTATGgaaatgacacacacatagtgtggagaaaaaaagttcacatcctcttaaaaaaaatctataagaAACAACAGAATATGCAGAACAGTACGATagcatttacaataattaattctCAGTTCTCGCGAGAGTCCAACGTAATTTTACAACAATATTCAGCATGTCCTCCTTCTCCCAGGAgttgatatatttataatttcattCTCTCTTTTTCCAGGGCACTTCCTGTGAAAAGGGTCCCAGGGATAAAAACATTGGCTTCTCCTTGGTCCAGATTCGATGCCAAGAATGGAGCTCCTTGAAGTCACTGCATGAAGTCAATATATGAGCAATGCCACCGCTGCAGGAACagGGTCCCAGAGGTAGAGTACCCTCCTGTGAGACCCAGTGACACCAGTCCGAGGTGGAATCAAAGAGTAGAAGGCAAGAGCGCTAAAGTGCAGTGAGTGAAAGATGTGATGTGATGGACTACCTGTAGTGTGCGTGAGTGTGGAGCCCTACAGTGCAACTGGGGGGAAGGAGGGCAGACAACCCAAGGCCTTACCAGGTGGTCTAATTCCCATGTGCTGCTGGCCATCCATGACAAACCCTCCCATCGGCTGACCGTCTGGATTGTAGGGTGCTCCTTGACTTACTGGAAGGGGCATGGGACAGCCGTTaattaatggtttaattaatgtTCACCCTCAATAGCTGGACAAGATAAGCTCCTCTTCTGGGTTTGTTCTGAGGACGTTTTTTGCCCTTTGGTTTAAATGATGATTGGCAGctaataaaaatgcaagatCGTATGACAGTgacaaatcacaaatcacagAATCGAGAAAATACCCTGAGGCTGGACTCAAACGCCCCAAAGATTTATATGAGTTGACTGAGACTAAAAAAATTAGAAGAACCCCAAGTTATTCAAATATGAGGTTTGTCACTTAGTGTTTGAATGTAGTTCTGACTACATTATTAAAagcactaaaaacaaaacattaaacccAGAAAATATTTTGGCGGATATTAAAAACACCATCAAGAGATTGCGTTCCATCACCAATAGCCCCGCCATCCAGCATTTTCCCATCCCATAAAAATAAGCTTACTCCAGAAATGCGCTGCTTTGGGTTATTCAAGCAAAAAAACAGTTCTACCTCCCCGAATGCCTTTGAACTTTACTGAGTCCCTAATGCAATGCTGACCCCTTTGCCCCTCTGACAGGTAATAAAGTTTACAGCAGTCCACACCAAGCCGTGCACCAGGGAGTGGTCATTGCAGCACAGAGTAAAAAAGCTGGGAAGCAAAATTCATAAAActcacattcatgtttttatttttttcctttttcttcatttgtttcagatttatttGAGGAAAAAGGAAACGGCTGAACATGGTGGAGCTAaagaagttatttaatttggttgtgttttaatttcactataggatttttttaatttttaattttaaagtcaaGTCAAAATGATTAGTCTTGTTATTTATTGGATGGATTTTAGTTGTCATACACTCCCAGCATCCATTGGTAGTTTATTTACCAGGTAGCAGACCTCCAGGTGAATGGCTTGAGGACGCTTTTCGCCTGCGAGACTTGAATACAGTTACTATTGGGGACTTGCCTGCTCGATTGGACTGGTCTATCATGGGCTGCACTATTCTCCTTCTTGCATTAATGAACCTGAAAGAAAGCAACAacagtggaaaagaaaaaaaaatcctgtcaaTTAGAGCTGCAGAATTACAGAACTGTGCATATGATTACACGTCCACAAACAAaaaggtgttgtttttttttttgtgacaatACTGAACAAATACACGCTGCAGCCTGCAAGCATGCCCCACAAGGCAACACAAAGCCTCTGTCAGCACATTTCTTTACACTGTCCAGACTCCTCCACTGGACCTCCAGAAGAGAGAGAATgcaaagatctttttttttttttgccatacTTTTCAAGAAAGAGTGGGTGAGGTTATAGCATTAAAGAGGTCTGAAACATGGATGTGTAGGATGAAACCTTGACTTTTGTTCTATTCTCCATTACCTGCTAGTACAAACCCATCCTTGTGTAAAat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU200504 True 2655 lncRNA 0.40 2 10441947 10448746

Neighbor

gene id symbol gene type direction distance location
AMCG00001639 c1d coding upstream 215865 10222565 ~ 10226082 (+)
AMCG00001640 wdr92,LOC107699151,LOC103374796 coding upstream 229873 10208776 ~ 10212074 (+)
AMCG00001641 ppp3r1b,LOC108441257,LOC107594412,LOC107558205,LOC107577029 coding upstream 240012 10199198 ~ 10201935 (+)
AMCG00001632 LOC107580235 coding upstream 264049 10174132 ~ 10177898 (+)
AMCG00001631 LOC103355666,LOC100697573,LOC101465959,LOC102795325,LOC106577087,LOC108243857 coding upstream 344144 10095360 ~ 10097803 (+)
AMCG00001646 NA coding downstream 246220 10694966 ~ 10705277 (+)
AMCG00001644 rab1a,LOC107676578,LOC103035225,LOC107666439,LOC107601860,LOC105005759,LOC107725478 coding downstream 261127 10709873 ~ 10717682 (+)
AMCG00001657 NA coding downstream 347982 10796728 ~ 10797750 (+)
AMCG00001654 NA coding downstream 403127 10851873 ~ 10870202 (+)
AMCG00001650 peli1b,LOC107583279,LOC107583565,LOC107720901,LOC107670869,LOC107654901 coding downstream 456728 10905474 ~ 10918546 (+)
G159250 NA non-coding upstream 122803 10315061 ~ 10319144 (+)
G159204 NA non-coding upstream 371613 10069930 ~ 10070334 (+)
G159169 NA non-coding upstream 572344 9869168 ~ 9869603 (+)
G159170 NA non-coding upstream 578719 9862960 ~ 9863228 (+)
G159142 NA non-coding upstream 1072037 9316111 ~ 9369910 (+)
G159294 actr2,actr2a,LOC108423375,LOC104930021 non-coding downstream 236036 10684782 ~ 10687436 (+)
G159333 NA non-coding downstream 311230 10759976 ~ 10760189 (+)
G159356 NA non-coding downstream 392351 10841097 ~ 10843834 (+)
G159377 NA non-coding downstream 518588 10967334 ~ 10968401 (+)
G159378 NA non-coding downstream 520655 10969401 ~ 10972090 (+)
AMCG00001630 NA other upstream 282121 10157734 ~ 10159826 (+)
G159174 NA other upstream 527283 9913308 ~ 9914664 (+)
G158836 NA other upstream 2280132 8159146 ~ 8161815 (+)
G158725 kat14,LOC106584902 other upstream 2508392 7933156 ~ 7933555 (+)
G158676 NA other upstream 2694967 7746681 ~ 7746980 (+)
AMCG00001643 spred2 other downstream 206441 10655187 ~ 10677854 (+)
AMCG00001645 NA other downstream 298743 10747489 ~ 10757858 (+)
AMCG00001691 NA other downstream 1881233 12329979 ~ 12333700 (+)
G160026 NA other downstream 3820869 14269615 ~ 14270190 (+)
AMCG00001760 mpc1,LOC107725004,LOC106589821,LOC107693783 other downstream 4882874 15331620 ~ 15334580 (+)

Expression


Co-expression Network