AMCG00001639 (c1d)


Basic Information

Item Value
gene id AMCG00001639
gene name c1d
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 10222565 ~ 10226082 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001639
aaaatggcCGATGAAGATGTCCCTGTGGAAGACTATCCGTCAGAGATCGCAGAGTACCTGACAGGCTTTGAGTCCTCCCTGGGCTCTGTGAATGAGATGATCAAGACCATGATGTCCATCTCTAGGAGCGAGCTTCTTCAGAAAttGGACCCCCTTGAACAAGCAAAACTGGATCTGGTCTCGGCTTATTCCCTGAATTCCTTGTTTTGGATATACTTGGTGACACAAGGGATAAACCCCAAAGAGCACGCAGTTAAACAAGAATTGGAGAGAATAAGAACTTACATGAACAAAGTGAAAGAAATCACTGACAGAAAGAGAGCGGCCCGCCTGGACAAAGGAGCAGCTTCTAGGTTTTTGAGAAATGCTTTGTGGGAGGCCAAGTCGGAGGAGCCCAAGGCTGCACCTGAAGGTTCACATCAGTCAAAACGCAGAAAGCGGAGCTGAAGAAGAACCGCAACAAAAGAGGAGAAGAATGGACGCGTGCCGAAGACGACAACCTCTCCGTGCTGAGTGAATTGTGTGAAGATAAAGGGATTTCTCAAGACAATGCTTGAAGACACTTAATTAATAAGCAATTGTCTTTCCCGTACTTGCAATTAAGACGAGAcactgctggaaaaaaaactgcattttcgTTGCAGCTCTTGGTAATGTAGGAACCTGTATTTTATATGCATAAACCAACCCAACATTCATCCCTAGATTGTAAGAGTCTGAAAATATGTACATAGAATATCAAGTaatttgcaaacaaaataaatacagtatacatcAAATTGTGTCATGAGTTTAACATTAGTCAAGTTTGTATGTAGAAATTCTCTCTAaagattgtgttgttgttgtgttgatgtgtattaaatataatggaTCAAACATGTTCTATGAAGTTGCCAATGAGAAGACTGGATCGGCATTTGTTCACAtaattattgtgtgtgtacatgtttaTATCCACAATATATAGAACATGTTCAGTtgcattgtgtaaaatgtaCCTCATGTCCTCCTCTCCTTTTCCTGTAATCATCCCAAACTTCTCATGTTTACTCAaatgttgcttttcatttgtgCGTTCCAGTCAAATCAATCTGCCCGTGCTAATCAAACGCAGGAAGCAGACGAGTTGCCATGCTCCAGGGTACTGTTCAGGGTACTTCATAATGGTTTTCAAGCAGGCTCcgttgttttatgtttgttttgcaaccATTTATGAT

Function

symbol description
c1d Predicted to enable DNA binding activity and RNA binding activity. Predicted to be involved in maturation of 5.8S rRNA and regulation of gene expression. Predicted to act upstream of or within rRNA processing. Predicted to be located in cytoplasm and nucleus. Predicted to be part of exosome (RNase complex). Predicted to be active in nucleolus. Orthologous to human C1D (C1D nuclear receptor corepressor).

NR:

description
PREDICTED: nuclear nucleic acid-binding protein C1D isoform X1

GO: NA

KEGG:

id description
K12592 C1D, LRP1; exosome complex protein LRP1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001639 True 1220 mRNA 0.41 4 10222565 10226082

Neighbor

gene id symbol gene type direction distance location
AMCG00001640 wdr92,LOC107699151,LOC103374796 coding upstream 10491 10208776 ~ 10212074 (+)
AMCG00001641 ppp3r1b,LOC108441257,LOC107594412,LOC107558205,LOC107577029 coding upstream 20630 10199198 ~ 10201935 (+)
AMCG00001632 LOC107580235 coding upstream 44667 10174132 ~ 10177898 (+)
AMCG00001631 LOC103355666,LOC100697573,LOC101465959,LOC102795325,LOC106577087,LOC108243857 coding upstream 124762 10095360 ~ 10097803 (+)
AMCG00001633 pcsk2,LOC107699156,LOC106607177 coding upstream 171871 10014223 ~ 10050694 (+)
AMCG00001646 NA coding downstream 468884 10694966 ~ 10705277 (+)
AMCG00001644 rab1a,LOC107676578,LOC103035225,LOC107666439,LOC107601860,LOC105005759,LOC107725478 coding downstream 483791 10709873 ~ 10717682 (+)
AMCG00001657 NA coding downstream 570646 10796728 ~ 10797750 (+)
AMCG00001654 NA coding downstream 625791 10851873 ~ 10870202 (+)
AMCG00001650 peli1b,LOC107583279,LOC107583565,LOC107720901,LOC107670869,LOC107654901 coding downstream 679392 10905474 ~ 10918546 (+)
G159204 NA non-coding upstream 152231 10069930 ~ 10070334 (+)
G159169 NA non-coding upstream 352962 9869168 ~ 9869603 (+)
G159170 NA non-coding upstream 359337 9862960 ~ 9863228 (+)
G159142 NA non-coding upstream 852655 9316111 ~ 9369910 (+)
G159101 NA non-coding upstream 1008218 9210120 ~ 9214347 (+)
G159250 NA non-coding downstream 88979 10315061 ~ 10319144 (+)
G159273 NA non-coding downstream 215865 10441947 ~ 10448746 (+)
G159294 actr2,actr2a,LOC108423375,LOC104930021 non-coding downstream 458700 10684782 ~ 10687436 (+)
G159333 NA non-coding downstream 533894 10759976 ~ 10760189 (+)
G159356 NA non-coding downstream 615015 10841097 ~ 10843834 (+)
AMCG00001630 NA other upstream 62739 10157734 ~ 10159826 (+)
G159174 NA other upstream 307901 9913308 ~ 9914664 (+)
G158836 NA other upstream 2060750 8159146 ~ 8161815 (+)
G158725 kat14,LOC106584902 other upstream 2289010 7933156 ~ 7933555 (+)
G158676 NA other upstream 2475585 7746681 ~ 7746980 (+)
AMCG00001643 spred2 other downstream 429105 10655187 ~ 10677854 (+)
AMCG00001645 NA other downstream 521407 10747489 ~ 10757858 (+)
AMCG00001691 NA other downstream 2103897 12329979 ~ 12333700 (+)
G160026 NA other downstream 4043533 14269615 ~ 14270190 (+)
AMCG00001760 mpc1,LOC107725004,LOC106589821,LOC107693783 other downstream 5105538 15331620 ~ 15334580 (+)

Expression


Co-expression Network