G159250


Basic Information

Item Value
gene id G159250
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 10315061 ~ 10319144 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU200477
tattttaaaatacattttaataaagaatgATTTTCAAAAAGTGAGGCACTATTACTGTCAGGTACATCTGAATATAAACTGCTTATATAACTTAATGTAACACATTATGTGGTTCCTTTTTACTCTTCCTTGGTGCTTTCATAATAGTGCAAATatgtacaaacaaatacaggacAGGACATAGAAATGACTTGATGTACAGTTGCTCGACACAGCACAGCTACAACAAATATCTTGCAGGACCCCAAAACATTCACTCGCCTAACTATTTTGCTTAATGTAACCCAGGGGAGCAAAAACATTGCAGGATCATCATTACTTTGACTTGCAATGAATTACTGATTACAGTAACAAGAATAGACCTGTAACCTCCACAGCAGGTGTACTTGATAGACAAGCGCACTGGTCCAGGAAGACACTACTCACTCTATAGGGCATTTCTAGGACATGCAAGACCAAATGGACTTCTGTAACTACTAATCAGACCAGGAAACCAAAATAATATGCTAGCAGATCATGCAAAGTCAACACTTCGGAGAATCAAGGCTTCCAAGCTTTTAACTCACCattaggagagagagaaaaaaagtttaagCAGATGATTGAATATGGACTTAACCAAATATTTTCTCAGCACTATCATTTTGATGACATCGTAAAGTTCTGCATGGTTTCTAAATAATTTAACCATGATAATTGTCTTACAGGCAGTGAAGTACATACGTTTTAAGTGCTCCATAAGGTTCTGCATTGTACATAATACTTAGTGTCCCAGTAGACTTTTGAATTCACTACAGTGAGAGAACTGTATTTAGGATGTGTGGGGTTATTTTTAACTCTGGGAATTTCTTGATTCTGGGCTTTTGAATGGCAGCTTTTGTGGCAAGCTTTTGATGTAACAGTTAATTTTTAATCGCTAGTCAAagcttttaatataaaaaaaataaaaataaagtaggggggaaaaatattttagaagGGCAATACAAGATTTTGCATTCCTTAAATAGAACGAAACACAATGTCTcattacacaaattaaacaatcttAATGTAGTGTTTCAACTCTAGAAGCTACAAACCAGAGAAACTACGTCTTAATTTTGAACTGCAGTTTAAAACtttatccttaaaaaaaacactctggTTGAAGCCCATtagcagattaaaaaataagtaaagactgtaaaattgtaatttagtcTGAAATCAGCAGCAAGCAACAGTCAAACTCTGCAGAAGTCAAACTCTGCAGTTAACCGACACTGTCTTTGGGCATTTCAGAAACCTTTCGAAGCTCCAGAAATGTCTCAGTTTGTACGCGCTCCTCCAGAGAGGCCTTGCTGGTAGCATTCACGTCGAAGCGCCATTCTTCTGAGAGGCCTGCATCCATAACCTCCTGCGGGCCATCGCTTCTTGTTTCTTCCTTTCAATCTCTTCTTTAGAACACTTAACAGTCTTTTCATTggagagaaaaacTTGTTTGTCAGCGCCACAGGGTCGGACAGATGTCTTTTGAAGGAAAACTTATGAGAAGCTTCAAGGATTCTTGCCGATGTTTGTGATGGGACGGTCCTGTTGCTAAAGTCCTGTATATAGCCTGTGCCCTTCTGGATTGTATTCTTCGTAGTTTGTAATCCTATCATTAGACTCTCGTGATCTTTTTTACTCACATTTGAAATGTTCGTTTTTTGCGTCAATGACCCAGCCACATATGCAGCAGGTTTTCCACAGCTTGAGGTGGCAGTATTTACAATAGGACTATTGGCTGGTAAAGAATAGGATCGGTTGAATGCAGTTGGGggcttattttttatattctcCAGGCGTTTGCATTGGTTACTGCTGTGAGTGACTGCATGGAAACTTTGAGCACTACTTAGAGCTCTACTCATGCCAATAGCTGGGACAGACTCCAAGACAGGGTTCGGGAGATGTGTTTTTGTCAGGGTAGATGCAACATTTGTTCTCAACCCCACTCCTTGACTTTGAGAAATCTTTTCCACATCATCACATGCTTGATATAGCAAGTCATCATCACTTCCATCGTCCCACAGAGGGTCAGAGTCAAAAAAAGAGTCCATATCAACACTGCTCTCAGCTGTGCTCTCAACTGGCTGTTGGGCAGTTGAGGGCTTTGTCGTGCCTGAAGATACTGAACTTTGCGGAACAAAGGGTTTGTATGGTCGGGGTTCTACTTTTCCACTGTGAATTTTCTGTGAGGCGTGTATATGTGTAGCAGATCCTGGAGGCTTGTTTTTGTCACCGAGACTTGTTCCAACAAGAGGTGCAGAATGATGATGCATGACTTTTTGTTGAGCAGGTTTAGTCCCTCCAAAATTGCTACACTGCTTGGATGCATCTCCTGAGACAAACTGAGGGTTTGCATCCAGCGTGAAAGTACttctgttttttgctttttcatttttgcctTGGAATGCATTTGTCACAAGATTGCTCCTGGTTTGCAGGGACTTTCCACAAGCTGTCACAGTAAGAGATGCAGAAGATGAACCACTGGCAACGCCTGCAGTTTTTGCTTGAACAAATCCCATTTCATTAGACAAGTGCTGGGCTTGTTTTGGAGCAGCGATAATGTTTGGATTTTGCATAATTTCAAGCACAAAAGAGTCATCTAGCAAATCATCACTACCCCAGTCATCATCAAAATCGTTATTTGATGCTACAGGCTTAGCAGGTGCTACTGGGTTGTTTGCATGCAACTCTAGTGaagagatgtttttattttttgcaggaAGCGCCTGGTAAGGATTATTTTCTGGAGGTTTACTGAACTTCAGATCATCTCCCTTTTCACAAACACTTTTGGCTGCAGGTTTTGTCATTTCAGCTCCTTCTCTTGAGTTTCCTGCTTCCTGGGAATTATTCGAAGAGCCCTGACTCAGTCTTCCACTGAGGTACTGAGTAGGTCCATCAAAAAGAGCATCCATGTCGTCGTCCGCCTCTAGATCAACAGGTCTGTTGTTGGAAGGGTTAATACTGACCTCTTCCAATACACCAGGAtctgtgactttgaaagagctgACGCTGCTTGTTCTAGCATCTTCACTCACAGAAAGAGGACGATCGTTTTGCTCACTCTCGTCCACAAGGGCCTGTTTCATGTTTGTATTCTGAAGTTCACTGCTTTGTTCCTTATCTTGTTGGATCATATTGATATCAAACTGCTTTGCGAGCTTCATAAGGTCCTCCACTCCATTTTGCcgactAGATTTCTTCTTCACTCTAGTGTGCTGTACCTCAGGAGTGC

Function

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0005248 voltage-gated sodium channel activity molecular_function
GO:0005272 sodium channel activity molecular_function

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU200477 True 3271 lncRNA 0.41 3 10315061 10319144

Neighbor

gene id symbol gene type direction distance location
AMCG00001639 c1d coding upstream 88979 10222565 ~ 10226082 (+)
AMCG00001640 wdr92,LOC107699151,LOC103374796 coding upstream 102987 10208776 ~ 10212074 (+)
AMCG00001641 ppp3r1b,LOC108441257,LOC107594412,LOC107558205,LOC107577029 coding upstream 113126 10199198 ~ 10201935 (+)
AMCG00001632 LOC107580235 coding upstream 137163 10174132 ~ 10177898 (+)
AMCG00001631 LOC103355666,LOC100697573,LOC101465959,LOC102795325,LOC106577087,LOC108243857 coding upstream 217258 10095360 ~ 10097803 (+)
AMCG00001646 NA coding downstream 375822 10694966 ~ 10705277 (+)
AMCG00001644 rab1a,LOC107676578,LOC103035225,LOC107666439,LOC107601860,LOC105005759,LOC107725478 coding downstream 390729 10709873 ~ 10717682 (+)
AMCG00001657 NA coding downstream 477584 10796728 ~ 10797750 (+)
AMCG00001654 NA coding downstream 532729 10851873 ~ 10870202 (+)
AMCG00001650 peli1b,LOC107583279,LOC107583565,LOC107720901,LOC107670869,LOC107654901 coding downstream 586330 10905474 ~ 10918546 (+)
G159204 NA non-coding upstream 244727 10069930 ~ 10070334 (+)
G159169 NA non-coding upstream 445458 9869168 ~ 9869603 (+)
G159170 NA non-coding upstream 451833 9862960 ~ 9863228 (+)
G159142 NA non-coding upstream 945151 9316111 ~ 9369910 (+)
G159101 NA non-coding upstream 1100714 9210120 ~ 9214347 (+)
G159273 NA non-coding downstream 122803 10441947 ~ 10448746 (+)
G159294 actr2,actr2a,LOC108423375,LOC104930021 non-coding downstream 365638 10684782 ~ 10687436 (+)
G159333 NA non-coding downstream 440832 10759976 ~ 10760189 (+)
G159356 NA non-coding downstream 521953 10841097 ~ 10843834 (+)
G159377 NA non-coding downstream 648190 10967334 ~ 10968401 (+)
AMCG00001630 NA other upstream 155235 10157734 ~ 10159826 (+)
G159174 NA other upstream 400397 9913308 ~ 9914664 (+)
G158836 NA other upstream 2153246 8159146 ~ 8161815 (+)
G158725 kat14,LOC106584902 other upstream 2381506 7933156 ~ 7933555 (+)
G158676 NA other upstream 2568081 7746681 ~ 7746980 (+)
AMCG00001643 spred2 other downstream 336043 10655187 ~ 10677854 (+)
AMCG00001645 NA other downstream 428345 10747489 ~ 10757858 (+)
AMCG00001691 NA other downstream 2010835 12329979 ~ 12333700 (+)
G160026 NA other downstream 3950471 14269615 ~ 14270190 (+)
AMCG00001760 mpc1,LOC107725004,LOC106589821,LOC107693783 other downstream 5012476 15331620 ~ 15334580 (+)

Expression


Co-expression Network