G159377


Basic Information

Item Value
gene id G159377
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 10967334 ~ 10968401 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU200649
ctcAGGGTTACCAACTTTATTCCAAatagaattattttaacaagtCTGACAAACATCACCTCCAGTCTGTAGATTTAAGGTACCAGGTGTGAAGGAAACTAATGGATCACCATtagaagcaaataaaaaacatgtaaggtatgttccatttaattttttattgtacttttaaaGTCACCTATACAATGATTTTAGGACTAGTGCATTACGAAGATCACTCTAGTGTCTTCAGACAAGGCCCGGTAAAGCTTCATAAAGGACAGTGCTGCTGGTGTTACAGACGACATTGAAGTTTCTGGGGTTCTAAGTGCTGTGTTGTTGCTTCGTTGGGTCCTAGTCAGACTCCCAGGAATGAGACGGCGGTATCTCTCTCCTCCACCAGCTCTTCCGCGGTGGCATCCATCTTCCCACGGGAGAAGTCGTTGATGGACAGGCCCTCTACGATCTTCCAGGTCTTGTCCCTCGAGAGTACCGAACCAGATGTCCCTCATGTGGTCACAGATAGCTTTGGCAGCCGACATGGCGCTGGACAGCTTGCGGGCCTTGAN

Function

NR:

description
PREDICTED: copine-3-like isoform X1

GO:

id name namespace
GO:0008137 NADH dehydrogenase (ubiquinone) activity molecular_function
GO:0003954 NADH dehydrogenase activity molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0050136 NADH dehydrogenase (quinone) activity molecular_function
GO:0016651 oxidoreductase activity, acting on NAD(P)H molecular_function
GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor molecular_function

KEGG:

id description
ko00190 Oxidative phosphorylation
ko00710 Carbon fixation in photosynthetic organisms
ko04723 Retrograde endocannabinoid signaling
ko04714 Thermogenesis
ko05010 Alzheimer disease
ko05012 Parkinson disease
ko05016 Huntington disease
ko04932 Non-alcoholic fatty liver disease

RNA

RNA id representative length rna type GC content exon number start site end site
TU200649 True 548 lncRNA 0.46 2 10967334 10968401

Neighbor

gene id symbol gene type direction distance location
AMCG00001651 NA coding upstream 29415 10919255 ~ 10937919 (+)
AMCG00001650 peli1b,LOC107583279,LOC107583565,LOC107720901,LOC107670869,LOC107654901 coding upstream 48788 10905474 ~ 10918546 (+)
AMCG00001654 NA coding upstream 97132 10851873 ~ 10870202 (+)
AMCG00001657 NA coding upstream 169584 10796728 ~ 10797750 (+)
AMCG00001644 rab1a,LOC107676578,LOC103035225,LOC107666439,LOC107601860,LOC105005759,LOC107725478 coding upstream 249652 10709873 ~ 10717682 (+)
AMCG00001663 NA coding downstream 23677 10992078 ~ 11042644 (+)
AMCG00001665 cct4,LOC107700877,LOC102790717 coding downstream 306883 11275284 ~ 11280488 (+)
AMCG00001664 NA coding downstream 312903 11281304 ~ 11287784 (+)
AMCG00001669 LOC107715966,LOC108438731,LOC108269901,LOC107689808,LOC107744605,LOC107583557 coding downstream 342169 11310570 ~ 11325141 (+)
AMCG00001679 NA coding downstream 369966 11338367 ~ 11346415 (+)
G159356 NA non-coding upstream 123500 10841097 ~ 10843834 (+)
G159333 NA non-coding upstream 207145 10759976 ~ 10760189 (+)
G159294 actr2,actr2a,LOC108423375,LOC104930021 non-coding upstream 279898 10684782 ~ 10687436 (+)
G159273 NA non-coding upstream 518588 10441947 ~ 10448746 (+)
G159250 NA non-coding upstream 648190 10315061 ~ 10319144 (+)
G159378 NA non-coding downstream 1000 10969401 ~ 10972090 (+)
G159441 NA non-coding downstream 248918 11217319 ~ 11221908 (+)
G159483 NA non-coding downstream 468261 11436662 ~ 11439612 (+)
G159594 NA non-coding downstream 657270 11625671 ~ 11647452 (+)
G159775 LOC102207824,LOC102800191,LOC107693914 non-coding downstream 1708410 12676811 ~ 12679489 (+)
AMCG00001645 NA other upstream 209476 10747489 ~ 10757858 (+)
AMCG00001643 spred2 other upstream 289480 10655187 ~ 10677854 (+)
AMCG00001630 NA other upstream 807508 10157734 ~ 10159826 (+)
G159174 NA other upstream 1052670 9913308 ~ 9914664 (+)
G158836 NA other upstream 2805519 8159146 ~ 8161815 (+)
AMCG00001691 NA other downstream 1361578 12329979 ~ 12333700 (+)
G160026 NA other downstream 3301214 14269615 ~ 14270190 (+)
AMCG00001760 mpc1,LOC107725004,LOC106589821,LOC107693783 other downstream 4363219 15331620 ~ 15334580 (+)
AMCG00001762 NA other downstream 4463936 15432337 ~ 15439031 (+)
AMCG00001814 ryr2,LOC106456445,LOC108410403,LOC106906861,LOC101062804,LOC103129799 other downstream 5268861 16237262 ~ 16377860 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) G7192 NA non-coding CM030121.1 CM030121.1 41985243 ~ 42024740 (-)
tiger barb (Puntius tetrazona) G6056 NA misc NC_056699.1 CM032068.1 24868441 ~ 24870465 (-)