RNA id: TU200649


Basic Information

Item Value
RNA id TU200649
length 548
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id G159377
representative True

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 10967334 ~ 10968401 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ctcAGGGTTACCAACTTTATTCCAAatagaattattttaacaagtCTGACAAACATCACCTCCAGTCTGTAGATTTAAGGTACCAGGTGTGAAGGAAACTAATGGATCACCATtagaagcaaataaaaaacatgtaaggtatgttccatttaattttttattgtacttttaaaGTCACCTATACAATGATTTTAGGACTAGTGCATTACGAAGATCACTCTAGTGTCTTCAGACAAGGCCCGGTAAAGCTTCATAAAGGACAGTGCTGCTGGTGTTACAGACGACATTGAAGTTTCTGGGGTTCTAAGTGCTGTGTTGTTGCTTCGTTGGGTCCTAGTCAGACTCCCAGGAATGAGACGGCGGTATCTCTCTCCTCCACCAGCTCTTCCGCGGTGGCATCCATCTTCCCACGGGAGAAGTCGTTGATGGACAGGCCCTCTACGATCTTCCAGGTCTTGTCCCTCGAGAGTACCGAACCAGATGTCCCTCATGTGGTCACAGATAGCTTTGGCAGCCGACATGGCGCTGGACAGCTTGCGGGCCTTGAN

Function

GO:

id name namespace
GO:0008137 NADH dehydrogenase (ubiquinone) activity molecular_function
GO:0003954 NADH dehydrogenase activity molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0050136 NADH dehydrogenase (quinone) activity molecular_function
GO:0016651 oxidoreductase activity, acting on NAD(P)H molecular_function
GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor molecular_function

KEGG:

id description
ko00190 Oxidative phosphorylation
ko00710 Carbon fixation in photosynthetic organisms
ko04723 Retrograde endocannabinoid signaling
ko04714 Thermogenesis
ko05010 Alzheimer disease
ko05012 Parkinson disease
ko05016 Huntington disease
ko04932 Non-alcoholic fatty liver disease

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU200623 lncRNA upstream 123500 10841097 ~ 10843834 (+) True G159356
TU200592 lncRNA upstream 207145 10759976 ~ 10760189 (+) True G159333
TU200579 lncRNA upstream 209512 10747489 ~ 10757822 (+) False AMCG00001645
TU200580 lncRNA upstream 209512 10756134 ~ 10757822 (+) True AMCG00001645
TU200582 lncRNA upstream 212204 10747489 ~ 10755130 (+) False AMCG00001645
TU200652 lncRNA downstream 1000 10969401 ~ 10971236 (+) False G159378
TU200653 lncRNA downstream 1000 10969401 ~ 10972090 (+) True G159378
TU200738 lncRNA downstream 248918 11217319 ~ 11221908 (+) True G159441
TU200801 lncRNA downstream 468261 11436662 ~ 11439612 (+) True G159483
TU200938 lncRNA downstream 657270 11625671 ~ 11647452 (+) True G159594
AMCG00001651 mRNA upstream 29415 10919255 ~ 10937919 (+) True AMCG00001651
AMCG00001650 mRNA upstream 48788 10905474 ~ 10918546 (+) True AMCG00001650
AMCG00001654 mRNA upstream 97132 10851873 ~ 10870202 (+) True AMCG00001654
AMCG00001657 mRNA upstream 169584 10796728 ~ 10797750 (+) True AMCG00001657
AMCG00001645 mRNA upstream 209476 10747671 ~ 10757858 (+) False AMCG00001645
AMCG00001663 mRNA downstream 23677 10992078 ~ 11042644 (+) True AMCG00001663
AMCG00001665 mRNA downstream 306883 11275284 ~ 11280488 (+) True AMCG00001665
AMCG00001664 mRNA downstream 312903 11281304 ~ 11287784 (+) True AMCG00001664
AMCG00001669 mRNA downstream 342169 11310570 ~ 11325141 (+) True AMCG00001669
AMCG00001679 mRNA downstream 369966 11338367 ~ 11346415 (+) True AMCG00001679
TU200393 other upstream 1052670 9913308 ~ 9914664 (+) True G159174
TU199983 other upstream 2805519 8159146 ~ 8161815 (+) True G158836
TU199853 other upstream 3033779 7933156 ~ 7933555 (+) True G158725
TU199783 other upstream 3220354 7746681 ~ 7746980 (+) True G158676
TU199779 other upstream 3229444 7736515 ~ 7737890 (+) True G158672
TU201065 other downstream 1361587 12329988 ~ 12331448 (+) True AMCG00001691
TU201467 other downstream 3301214 14269615 ~ 14270190 (+) True G160026
TU201667 other downstream 4363219 15331620 ~ 15334567 (+) False AMCG00001760
TU201717 other downstream 4463936 15432337 ~ 15439031 (+) True AMCG00001762
TU202121 other downstream 5268861 16237262 ~ 16295506 (+) False AMCG00001814

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) TU8816 True 1649 lncRNA 0.48 2 CM030121.1 41985243 ~ 42024740 (-)
tiger barb (Puntius tetrazona) TU8816 True 1560 TUCP 0.46 3 NC_056699.1 24868441 ~ 24870465 (-)