AMCG00001651


Basic Information

Item Value
gene id AMCG00001651
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 10919255 ~ 10937919 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001651
GCACACCTACAGCACCCCTTCCTGCCGCTGACAcgccatccctccatccctgcACTTGGCTCCGCCCCGGCGCGGTGCATTGTGGTCGCCGGGCCGCTCTCTGCCGTGTTGTTGTCTGATGACTGTGATGGTGGATCGGGGAGGCTGGACGGCTCGGAGCTGCTGTGTTTCAGACGACAGCTAGCCTCCTTTCCGAGGTGTCCTTATGCAATGGCTTCGAGCCACAGTTCCTCACCAGTGCCTCATCCCAGCAACAGTGATGGTATCTTTAAAAAAGAGAGGAACTCCTCTACAAAACACTTTAAGCTTGTCCGGTCACTACCTGATGTGTGTCCAAAGGAGCCCACAGAGGATAGTCACAGTCTATGTGATGGCCCATCTGTTGTAGCTGATCAGCACAGATGGACAGTTTATAACTCGAAAGTCAATCTTCCTGCGGCATTGAATGACCCTCGTCTTGCTAAAAGGGAGTCGGACTTCTTCACAAAAACATGGGGTCTGGACTTCGTAGAGACTGAAGTCATGCCTTCCTTCTACCTCCCAAATGTCACTAAGGAACACTTTGCACCCTACCTTCAACAGACCACTCAGcgaGAAAAAATCCACGAAAAATGCAAGAATATCTGTCCGACAAAGGATGAACTTGACACAGTCTCCAACCTTTCAAATAACCATGGTAAATCAGACCTGGAGCAAGTACCTAAGATTTTTATGAAGCCAGATTTTGCCCTGGATGATCCCACTACGTTTAATGCCGTTTTACCGTGGTCGCATTTCAGTGGTGCTGGGGGGAAAGGAAGCCGTGATCTGGCCTCCTCACGCTTACTTCAAGAGAAGTTGAGCCACTACCTGGACGTGGTGGAGGTGAATATTGCACACCAAATCTCCCTACGGTCTGAAGCCTTCTTTCATGCCATGACCTCCCAGCATGAGCTGCAGGACTACCTCAGGAAAACCTCGCAGGGTGTCAAAGTGCTGCGTGAGAAAATTGCTCAGATTGACAAGGTCATGTGCGAAGGGTCTCTGCGTATCCTGCGGCAGGCGCTGACGCGGAACAACTGTGTCAAGCTCTACAACAAGATGAAGCTCATGGCCACGGTGCACCAGACGCAGCCCACCGTGCAGCTGCTGCTGTCCACCTCGGAGTTCGTAGGGGCGCTGGAGCTGATCGCCACCACACAGGAGGTGCTGCAGCAGGAGCTCCAGGGCATCCACAGCTTCAGACACCTGGGGTCACAGCTCTGTGAGCTGGAAAAGTTAATAGATAAGATGATGATAGCTGATTTCATCACCTATGCCAGAAGTGACCTGAACAGACCCCTGGAGGATGAATGCCAAGTATTAGAGAAGGATAGGCTGGAGTCCTTGGTGTTTGGGCTACTGAGACAGAGAAAGCTCGACTTCTTGGAGATCTACAGTGACGAGATGATTATTGCTGCAAAGAGTATTGTCAAACAGTGCATTATCAACACAGTGTTACAAATTGAAGAAATAGACACAGAAGTTGTCGTAAAgcTTGCCGATCAGATGAGGCTCATGACTTTCCCCCAGTGGTTTGAACTTCTGAAGTACATTTTTGCAAACTTTATACTCTTCCTCCAAAGGATAAAGGCGACACTGAGTGTCATCAGGAATGTTGTTCTGGAAGTGTTGGATGGGAACCAAAAGCATAAGCTGGCCGAGAGCGCTGTGGCTGAAGGAAGTGCGGGCAAAAACCCCCACCCGGATTCTGAAATCGCCTACTTGACGCACGAAGGCCTGTTCATCAGCGACGCCTTCAGCGCAACGGAAACGAGCAGCGCTGGAGCCGATTGCAAGAACCAAAGGGTTTCGAGCCTCCGTACCGACCCGGGTGGGAGCGACTCTGCTTCGGAGCCCGACTGCCCCACAGAGTCCTCATCCAGCAGGGAGCGGACGTCCTCCTCGCTCACCCCGGGGGCGATGGAGATGATagTTAGCGAGGGCATGATGCTGACAGACCTTGAACTCGGCCGGGTGGCCAATAACATTCAAGAGCTGCTGTACAACGCCTCCGATGTGTGCCACGACCGCTGTGTCAAATTCCTCATGGCCAGGGCAAAGGATGGGTCTCTGGAGAGGCTGAGCTCGTCCGAGTTCGTGGGGCTCTCTCAGGCCGTGGAGCAGTTTGTGCAGGAGACGGAGGAGCTGTGTGGCAGGAGGAGCATGTCCCTCAGGGGGGCGCTGCAGAGCCAGGCCAACCGCTTTGTCAATCGCTTCCACGAGGAACGCAAGACCAAACTAAGCCTCCTGCTCGATAATGAACGCTGGAAGCAGGCAGAAGTTCCTGCAGAGTTTCAGGACCTTGTTAACTCTATTGCTGACGGGAGGATTACTTTACCAGATAAAAAGCAAACGGCCACAGAAGACCGGAAGCCCAGTGACTACCTGAGTGTTGATGGACAGAAGTACACTGTTGTTGGGACGGTCTTGCTGTTGATCAGAATTTTCCTTGAATACTGCCAGTGTGTGAACGACATCCCCTCCATAGCCACCGATATGCTCACTCGCTTGTCAGACTTACTGAAGCACTTCAACTCCCGGAGCTGCCAACTGGTCCTCGGGGCTGGGGCCCTGCAGGTCGTTGGTTTGAAGACAATAACTACAAAAAATCTGGCTCTTGCCTCGCGCTGTTTGCAACTGATCGTACACTACATTCCTATAATCAGGGCTCACTTCGAAGCCCGGCTGCAGCCCAAACAATACAGCATTCTCAGGCACTTTGACCACATTACAAAGGACTATAATGACCATATAGCTGAAATCTCGGCAAAACTTGTAGCAATCATGGACGGCTTGTTCGAGAAAGTTTTGTCCAAGtatgaAGTTAAGGCCCCTATGCCATCTACCTGCTTCCGAAATGTCTGTAAACAAATGGCCAAAATGCATGAAGCGATATATGATCTTCTACCTGAAGAACAAACACAGATATTGTTCTTGAGGATAAATGCAAGCTTTAAACTCCATTTGAAGAGGCAGCTAGCTCGACTCAATGTCATAAACGACGGGGGACCGCAACACGGTCTGGTTATGGTAGATATAGCTTTTTACACTGGGAATATCCAATCACTGAAGACACTTGAAAATCTACACTTGAACATGGCAGAGATCTGGGAGCAGAAGAGGTGATGCTCTAACTGGAAACTCAAGCCTCGTCCATCGCATGTCAGGATACGCTTCTCAATTCTAAGACCTTTTCTGCCCTGGAACTGGATTCCCAGCCCAGAGCCGTGCCGCAGCGGGGCCCCTGGGGGCCGAGGGTGAGCGTGACCGGGGAGGAATGCCCCGAAGAGGGCTTTGTGGCCAGGCCAgggatgctgctgctgctgctgccctgtGACTTATTACACTCTTTAGAAAGACTCAGGTTTCTCTGGACCAAATCGCAGCGTGGATATGTCTGTGACACAGCCGGGGCCGCGCCGAAGAGCTCTGTCAGTGAGACGACAGCGCGGCGCATCTGTACTGCTGTGACTTCATCTCATGTGCAATTGAGTTCCAGAAATTCAATCATGGTACAGTTTGTATGACAAAAGCTTTTAAATCCTGCAAGGAggtaaagacaaaaaaaacaaacactatctggtaacttatttttttacagatctTTCTAAAATCTTACTTTTAGATTCCGTTGCGTTAAAAGATGTAAACATTTTGATTCAGCAAGgtatacaaaacagaaatggttaCATGCGTGTAAATCTGGATGTAATTGTACAGGTTGTTAAATGAAatcttatataatatatttgtataaatcctagtttatttgaatgttttgtttcttttggtgTTTCAGTTTTGGTCAAGCATCTTCTGGGTTGGCAGAAggactttttttatttgcagtatCTGCTTATTTAGAACGTTTTAAATTCTGGAGTTGGTGTAAGTGATCGCTTACCGATTTTTAACATCCTCACCACCCATTAGATCAACTGTAAGCGACTTTAAAGAGTGGTGGAGCATCAGATATCGCATTCAACCGTTCCGGTTcagtataatttacattttggctCCAGCGATAAAACCTCGATGTTATCTGAATATAATCCCCAGTATATTCTGTATGGTCTTGATTTAGGTATGCAGTATATTGGATCTGATTCACTGATTGAGTGAATACGTTGATTTAAGCACGCCATGACAAAAGCGAGAAGTCCAAGTAAATGTAACGCACACTCctgtacttgtgtgtgtgtgtgtgtgtgtgtgtgtgtcatatatgACCAAAGGTCCCTAGCCCTAACATGATCTCTCAAaaggacatttgtttttaactctaCAATCTAAGTTATCTCTGGTATTGCAGTAGGCAAACAGGAATATCAATAGGAAGGGGCTACTGGGCGTCAAGTGAGAAGTATTTATAACCACAGGGGCAATTTTGGTTCAGTTGTGGAAGATGACACTGAGGAGTGTGGACAGCAGCTCGATTTGGGAACATCAGGGCCCGTGTGAGGAGATTCTGAGGTGAACTTACAGATGCCCTTGGTGCTGCGTATTCTACCAAATGTAACCGTTTTGTGGCCATGGTTCATAACCTGCCGACGGTGGAGCCACGGCTTAAAATGAACTTGGGCAGAATCCCACAGTACACGATCTACACGGACAAAtctatttaaagaaagaaaggagttGAAGCTAATTTAGAGAGCTctttattccaaataaatatttataaatggttttaatcatttttaggTTTTGGGAAATAATTGTGGGACTTTGTAGAGGAGGTAGCGTGGAATTTTGTCTGTCGATTGTGGCATGTGGGGGGTTGTCCAACTCAGCACATGAACCCCTATTAATTTGCATACTGTCCATATAAACACTGGTGTCTCCTTTCTTCAGTATATGTAACATGTTCCCCCTGTTTTTAACAATCATAGCAGTCTGAATATGAAGTGAGTTGATTCTTACGTTTACaaggtgttttttgtattaacttTGCACCATTGAGTAACAGTGCTGTAAACTCATTGCTAACTCAAAAGTGCCTACTTTTAAATGAGTATCAAAGGCTATGGATTCTTCCAGCAGTATATTTCCTGTTCCAGTGCCTAAGCGATCGCCCTGTCGTATGGAATGGTCCCTGGTTGCTGCACTGGCAGGTACAAAAACTTCAATGGCATGCCTGAGAGTTTGAACTGTCCTGAACCCAAGAACTTTCTCAATAAAACCAATCTATGAAAGTA

Function

GO: NA

KEGG:

id description
K17600 VPS54; vacuolar protein sorting-associated protein 54

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001651 True 5219 mRNA 0.47 23 10919255 10937919

Neighbor

gene id symbol gene type direction distance location
AMCG00001650 peli1b,LOC107583279,LOC107583565,LOC107720901,LOC107670869,LOC107654901 coding upstream 709 10905474 ~ 10918546 (+)
AMCG00001654 NA coding upstream 49053 10851873 ~ 10870202 (+)
AMCG00001657 NA coding upstream 121505 10796728 ~ 10797750 (+)
AMCG00001644 rab1a,LOC107676578,LOC103035225,LOC107666439,LOC107601860,LOC105005759,LOC107725478 coding upstream 201573 10709873 ~ 10717682 (+)
AMCG00001646 NA coding upstream 213978 10694966 ~ 10705277 (+)
AMCG00001663 NA coding downstream 54159 10992078 ~ 11042644 (+)
AMCG00001665 cct4,LOC107700877,LOC102790717 coding downstream 337365 11275284 ~ 11280488 (+)
AMCG00001664 NA coding downstream 343385 11281304 ~ 11287784 (+)
AMCG00001669 LOC107715966,LOC108438731,LOC108269901,LOC107689808,LOC107744605,LOC107583557 coding downstream 372651 11310570 ~ 11325141 (+)
AMCG00001679 NA coding downstream 400448 11338367 ~ 11346415 (+)
G159356 NA non-coding upstream 75421 10841097 ~ 10843834 (+)
G159333 NA non-coding upstream 159066 10759976 ~ 10760189 (+)
G159294 actr2,actr2a,LOC108423375,LOC104930021 non-coding upstream 231819 10684782 ~ 10687436 (+)
G159273 NA non-coding upstream 470509 10441947 ~ 10448746 (+)
G159250 NA non-coding upstream 600111 10315061 ~ 10319144 (+)
G159377 NA non-coding downstream 29415 10967334 ~ 10968401 (+)
G159378 NA non-coding downstream 31482 10969401 ~ 10972090 (+)
G159441 NA non-coding downstream 279400 11217319 ~ 11221908 (+)
G159483 NA non-coding downstream 498743 11436662 ~ 11439612 (+)
G159594 NA non-coding downstream 687752 11625671 ~ 11647452 (+)
AMCG00001645 NA other upstream 161397 10747489 ~ 10757858 (+)
AMCG00001643 spred2 other upstream 241401 10655187 ~ 10677854 (+)
AMCG00001630 NA other upstream 759429 10157734 ~ 10159826 (+)
G159174 NA other upstream 1004591 9913308 ~ 9914664 (+)
G158836 NA other upstream 2757440 8159146 ~ 8161815 (+)
AMCG00001691 NA other downstream 1392060 12329979 ~ 12333700 (+)
G160026 NA other downstream 3331696 14269615 ~ 14270190 (+)
AMCG00001760 mpc1,LOC107725004,LOC106589821,LOC107693783 other downstream 4393701 15331620 ~ 15334580 (+)
AMCG00001762 NA other downstream 4494418 15432337 ~ 15439031 (+)
AMCG00001814 ryr2,LOC106456445,LOC108410403,LOC106906861,LOC101062804,LOC103129799 other downstream 5299343 16237262 ~ 16377860 (+)

Expression


Co-expression Network