G159378


Basic Information

Item Value
gene id G159378
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 10969401 ~ 10972090 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU200652
AGTTTCCACAGTGGGTTTGAGagcagaacatttaaataaatcataggaGGTCTATCTGGTAACTGAGGAGTTATTCAGGTGGGGGACTCACAGAAATGAAGTCTCCCTTGAGCCAGGCGTCATCCTTCACTGCATCATATGCGGAGATCTCCTTGCCCTTAATGGAGACCTTGGCGTGGTGAACGTCAGGGTACTGGGTGGAGGAGTGGTTCCCCCAGATGATGACATCCTTCACATTGTCTGCAGAAACTCCCACCCGCATTGCACCTGTGACCTGGCCCTATTGTGATCCAAACGAGTCAAGCAGGAGAAGTTCTCCTTTGGGATAGATGGAGCCGATTTTGAGGCAATCAGGCAGTTGGTGTTTGCAGGGTTTCCAACCACCAGGACCTGACAGTCTTCTTAGCATATTTCTCCAGAGCACCACCCTGGGACTTGAAAATGTTCACATTGGCTTTCAATAGGTCCTTCCTCTCCATGCCTTCCTTCCTTGGCATCGATCCCACCAGGACTGCAGCATCGAGGTCCTTGAATGCCACCTCCTCCTTGTCAGTGGGAATGACCTCTGCAGAACACAGACCTTCATTCAGAATCTGagctgtaaactgtaaactgtaaacttaATCTGAGGATGTCCTTTAAACCAACCGAGAAGGGGTAGGTAGGTCTATTTTTTTGAAGCATGGATTTCAGATAAACGCTAGAAAAACCCGTCAGTTTAATGGAAAATACTAGTTTAAACATGACCAATGTAGCAAAATTAATTAGGAAAACGGCCCCGTTCACAGATTCCAACCGATGTACTTCACTCTGATAAGTGATGATAAATCACTTATCAGGGTGAACTTCAGCCAGGGCTCAGAGAGTTGATAACATGGTAATACCTTGCACAAAACGCAGCATTCATCGATGTCACAAGTGAGGACCAATCAGGGCCCTCCAATTTTACACACCTCTCCACTGTGTTCTTAGAAAC
>TU200653
AGTTTCCACAGTGGGTTTGAGagcagaacatttaaataaatcataggaGGTCTATCTGGTAACTGAGGAGTTATTCAGGTGGGGGACTCACAGAAATGAAGTCTCCCTTGAGCCAGGCGTCATCCTTCACTGCATCATATGCGGAGATCTCCTTGCCCTTAATGGAGACCTTGGCGTGGTGAACGTCAGGGTACTGGGTGGAGGAGTGGTTCCCCCAGATGATGACATCCTTCACATTGTCTGCAGAAACTCCCACCCGCATTGCAACCTGACCTGGCCCTATTGTGATCCAAACGAGTCAAGCAGGAGAAGTTCTCCTTTGGGATAGATGGAGCCGATTTTGAGGCAATCAGGCAGTTGGTGTTTGCAGGGTTTCCAACCACCAGGACCTGGAAAGAACAAAAAGCTTAATTGGAAACTCTTGCAGTCCAGGTCACGAAAGGGCCTAGAATACAATTGCCTATTGAATTTACACAGAACAAGTTGAGAAACTTCATCAAATCCTGGTTTATACTAGAACTGAATAGTGTAAAAAAAGATGCACCATAACTCCAACCATTTTCAAGTAAACAAATTTTAAATGCAAGTTTcaatttagaaaagaaaacaagacatttcCCCTCGTATGCTTAAGTCTGGGGTACATTGCTGATCTGtgcatattttcatataaaaaaagcctgcaacaggaagaaaaatatacacCCTCCTTCCTGTTGCCAGGGACTGGATAGAGGAATGGGGGAGGAGATACCCTGGCGTCTCCCCTGATGCCAATGGATTCaggcaatcattacaaattttcACATTTACAAGATTGTTACTGGTCTTCAAAATTAACCaagaaaaagctaaaataaGTGCTAGACAACTAGTTTTAGAATGCTACTTAAATTAATACTTCAAAATTAAAGCAAGTTTACTAGAGAAGAAATGacttcttaaaattaaaaacctgcAGGAAGTAACCTGAGGAATTCTTGCTCGCACTGCAGAAACCGGATTTCCAGACAGGCTGCTGTGTGCACCACATGAAAAATCAATCTAACAAGCAATCAGCTCGgctgccccccccacagccTCATTAGTCTTGGTCACCTTGACAGTCTTCTTAGCATATTTCTCCAGAGCACCACCCTGGGACTTGAAAATGTTCACATTGGCTTTCAATAGGTCCTTCCTCTCCATGCCTTCCTTCCTTGGCATCGATCCCACCAGGACTGCAGCATCGAGGTCCTTGAATGCCACCTCCTCCTTGTCAGTGGGAATGACCTCCTCAGAAGTGGGAGAGCACAGTCCTGCAGTTCCATCACAACTCCATCTAGGACTGGTAGCATTGGAGGGATGTCAAGGAGAACAAGGATAAGGCCTGATCTTTGCCGAAGACATCTCCCTTGGCGATGCTGTACAGAAGGGAGTAGGCGATCTGTCCAGCAGCGCCGGTCACCAAAACCTTAATGGGGTCAGACtgcaacaagaaaacaaatgcaaacctCAATGATCTAACAATACCATGTGGGAGACTGGTAAGAGTATAAATTAAGCACGGATCAAATGCGTAGCTCGCAAGAGGTAGGCGGAGGGGTTCACATAAATAGAAAACACTTTTCCGGCATTACCTCAAGGAGGACACGGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU200652 False 976 lncRNA 0.46 3 10969401 10971236
TU200653 True 1636 lncRNA 0.45 4 10969401 10972090

Neighbor

gene id symbol gene type direction distance location
AMCG00001651 NA coding upstream 31482 10919255 ~ 10937919 (+)
AMCG00001650 peli1b,LOC107583279,LOC107583565,LOC107720901,LOC107670869,LOC107654901 coding upstream 50855 10905474 ~ 10918546 (+)
AMCG00001654 NA coding upstream 99199 10851873 ~ 10870202 (+)
AMCG00001657 NA coding upstream 171651 10796728 ~ 10797750 (+)
AMCG00001644 rab1a,LOC107676578,LOC103035225,LOC107666439,LOC107601860,LOC105005759,LOC107725478 coding upstream 251719 10709873 ~ 10717682 (+)
AMCG00001663 NA coding downstream 19988 10992078 ~ 11042644 (+)
AMCG00001665 cct4,LOC107700877,LOC102790717 coding downstream 303194 11275284 ~ 11280488 (+)
AMCG00001664 NA coding downstream 309214 11281304 ~ 11287784 (+)
AMCG00001669 LOC107715966,LOC108438731,LOC108269901,LOC107689808,LOC107744605,LOC107583557 coding downstream 338480 11310570 ~ 11325141 (+)
AMCG00001679 NA coding downstream 366277 11338367 ~ 11346415 (+)
G159377 NA non-coding upstream 1000 10967334 ~ 10968401 (+)
G159356 NA non-coding upstream 125567 10841097 ~ 10843834 (+)
G159333 NA non-coding upstream 209212 10759976 ~ 10760189 (+)
G159294 actr2,actr2a,LOC108423375,LOC104930021 non-coding upstream 281965 10684782 ~ 10687436 (+)
G159273 NA non-coding upstream 520655 10441947 ~ 10448746 (+)
G159441 NA non-coding downstream 245229 11217319 ~ 11221908 (+)
G159483 NA non-coding downstream 464572 11436662 ~ 11439612 (+)
G159594 NA non-coding downstream 653581 11625671 ~ 11647452 (+)
G159775 LOC102207824,LOC102800191,LOC107693914 non-coding downstream 1704721 12676811 ~ 12679489 (+)
G159798 NA non-coding downstream 1813705 12785795 ~ 12876686 (+)
AMCG00001645 NA other upstream 211543 10747489 ~ 10757858 (+)
AMCG00001643 spred2 other upstream 291547 10655187 ~ 10677854 (+)
AMCG00001630 NA other upstream 809575 10157734 ~ 10159826 (+)
G159174 NA other upstream 1054737 9913308 ~ 9914664 (+)
G158836 NA other upstream 2807586 8159146 ~ 8161815 (+)
AMCG00001691 NA other downstream 1357889 12329979 ~ 12333700 (+)
G160026 NA other downstream 3297525 14269615 ~ 14270190 (+)
AMCG00001760 mpc1,LOC107725004,LOC106589821,LOC107693783 other downstream 4359530 15331620 ~ 15334580 (+)
AMCG00001762 NA other downstream 4460247 15432337 ~ 15439031 (+)
AMCG00001814 ryr2,LOC106456445,LOC108410403,LOC106906861,LOC101062804,LOC103129799 other downstream 5265172 16237262 ~ 16377860 (+)

Expression


Co-expression Network