RNA id: TU201065


Basic Information

Item Value
RNA id TU201065
length 1289
RNA type TUCP
GC content 0.40
exon number 2
gene id AMCG00001691
representative True

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 12329979 ~ 12333700 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATCAGAAAGTGTTTCTTTTCAACATGGCCGCGCCCTTGAACCGATCCGGTGTGCGGGGCTCACTTTCCGTCTTCAAACAATAGCACAGAGCTTGCATTTCTTCAGTAAATTTGCGACAGACCTCTGACATACGCGCAAAGCGGACGCCATCTCGATGCGCAATGACCCTGCGGGACGTGGTGAAGTGGAACAGGCGGGTGTCGCTGCTGTACGCCGTGGGCATCTGGACGATGTTCGGCACTTACGGGTATTTCCAGATCAGGTCGAAGTGGAGTAAAAAGGACGATGAAGAACACATTAACGAGACACCACCTGTAGAACAAGAACTTGCAGATGAATATATACCTGAACCAACAGCGAATGAAAGCAAAGCACAGGGACTACGTGTAAAATCAACAGTCACCTACAGGGACAATTTCATCCCCTATTCGTCGAGAATCTGCAGCTATCTGCAGTCCCTGCGCAGCAGCTCCGAGGATGTGAGCGCACAAGACCCTGCTGCTCAGAAGTGATGTCCCCAAACCAAATCAATCAATCCTTATTTTACAGTGACAAAAAACCCAACTATATTTAAAAGCtgtatgttttcacacacatttaaataaagttattgtATGGGGTGTTGACATACAATGTCTCAACAAACATTTGATGACAGTGTCAGAAGCTTTGTCCTTGTTATTGCCTTGATCAATGATctaatatataaagtattacaTTGTCTGGTGCAGAAAATGCAGGTAACAAAGACACAGCgaacaaatattgaatgtatattgtatagtcTTCCTTTTAAGGATTATTACACATATGAGGATGGAATGGGATGTATtcacaaatgttatattttcgGTTACTAACGTGTTATTTTGTCTATTGTAGTCAACATCACACAAGGTGCTCTGCTGGTCTATTAGACACACTCAAGAAGTCATTTTTGTATCATATGGTGgctgtgtatttattcaaacTTGATTTGCCTTAACCCAAGATTGATAAGAATTAATACCATGTAAAAAAGGAAGGAAGGCCATTCACCCATACTAATAGCTTTAACACCTTGAACTTTAGATTATAAACAATAAGTATCCATATGAATGAGCAATATACTCCTGATAATGATCTTTCTCTGCCAATTTCTTAACACATCAGCAAAATCTCTATATTATTTGATTGACTGATTTGCTTGTAGTGGTTTTCTATACAATGTGGCccacaattacatttcagactAATCAAAATGTTTCTAATTAGAAATTAATCTGGACACTGGGCGCAAACCAGGAGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU200938 lncRNA upstream 682536 11625671 ~ 11647452 (+) True G159594
TU200801 lncRNA upstream 890376 11436662 ~ 11439612 (+) True G159483
TU200738 lncRNA upstream 1108080 11217319 ~ 11221908 (+) True G159441
TU200653 lncRNA upstream 1357898 10969401 ~ 10972090 (+) True G159378
TU200652 lncRNA upstream 1358752 10969401 ~ 10971236 (+) False G159378
TU201143 lncRNA downstream 345363 12676811 ~ 12679489 (+) True G159775
TU201183 lncRNA downstream 454347 12785795 ~ 12876686 (+) True G159798
TU201187 lncRNA downstream 468061 12799509 ~ 12810735 (+) True G159800
TU201465 lncRNA downstream 1935940 14267388 ~ 14267722 (+) True G160024
TU201478 lncRNA downstream 1974577 14306025 ~ 14306260 (+) True G160036
AMCG00001693 mRNA upstream 505 12317845 ~ 12329483 (+) True AMCG00001693
AMCG00001690 mRNA upstream 221669 12088205 ~ 12108319 (+) True AMCG00001690
AMCG00001674 mRNA upstream 714743 11613188 ~ 11615245 (+) True AMCG00001674
AMCG00001676 mRNA upstream 822479 11495066 ~ 11507509 (+) True AMCG00001676
AMCG00001677 mRNA upstream 933013 11385284 ~ 11396975 (+) True AMCG00001677
AMCG00001686 mRNA downstream 3576 12335024 ~ 12348395 (+) True AMCG00001686
AMCG00001692 mRNA downstream 94503 12425951 ~ 12449184 (+) True AMCG00001692
AMCG00001687 mRNA downstream 143740 12475188 ~ 12503194 (+) True AMCG00001687
AMCG00001688 mRNA downstream 176830 12508278 ~ 12515505 (+) True AMCG00001688
AMCG00001689 mRNA downstream 185564 12517012 ~ 12520705 (+) True AMCG00001689
TU200393 other upstream 2415324 9913308 ~ 9914664 (+) True G159174
TU199983 other upstream 4168173 8159146 ~ 8161815 (+) True G158836
TU199853 other upstream 4396433 7933156 ~ 7933555 (+) True G158725
TU199783 other upstream 4583008 7746681 ~ 7746980 (+) True G158676
TU199779 other upstream 4592098 7736515 ~ 7737890 (+) True G158672
TU201467 other downstream 1938167 14269615 ~ 14270190 (+) True G160026
TU201667 other downstream 3000172 15331620 ~ 15334567 (+) False AMCG00001760
TU201717 other downstream 3100889 15432337 ~ 15439031 (+) True AMCG00001762
TU202121 other downstream 3905814 16237262 ~ 16295506 (+) False AMCG00001814
TU202141 other downstream 4037965 16369413 ~ 16372304 (+) False AMCG00001814

Expression Profile