RNA id: AMCG00001687


Basic Information

Item Value
RNA id AMCG00001687
length 5024
RNA type mRNA
GC content 0.47
exon number 11
gene id AMCG00001687
representative True

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 12475188 ~ 12503194 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGGGCTTTGGGGGGTGAGAGAGCCTTCACAGACACCGCGAGGGCAGGATGGCGAGCACGCTGGTGCAACCCTGTCTGCTGGATCGGACAGGAAGCTTTTTCAAGTTGATTGATACGTTTGCCTCAGAAATCGGAGAGCTGAAGCAAGAGATGGTACAGACGGTCTTATCTGACAGGGATCCCGACAACTCGGATATGCAGGGCATAGAGGAAGACCTCAGCAGCCTATATCTCCAGGACTCCACAGGCAGTGCCAGAGACTCGGGCTACGACTCCCTGAAGAGAAAGATCAGTATCCTGGACCGCTTGATCAAGACCCACCCGGTGTGGCTCCTTCTGCAGCTCAACGATGAAGAGGCCATGCGGATCCTAAAGCACCAGCCGCCTGGGattttcCTCGTGAGAAAATCGACAAAGCTACAGAAGAAGGTTATTTCCCTGCGCCTTGATAGTGAGCTTGGGCCTCCTGTCAAAGACTTTCCTGTGAAAGAGAGTCAATACActttttctGTAGAAGGATCTGGAATTAGTTTTGCGGATTTGTTTAGACTTGTCGctttctactgcatcagcagGGATGTACTGCCATTCACCTTGAGACTTCCTGAGGCAATCGCAGCAGCTAAGACCCAGACGGATCTTGAAGAAGTAGCTCAGATGGGAGTTGAGTTCTGGGACTCCCCAGCACACAACCAACAGAAAACCCCTCCACTTTCTCAGCCCTGGCCATCAGACGGTGGGCGCAGACTGCAGAGGCAGCAGCGGGTCTCTCCCTCAGACTGCCTGCCTTCCCTTCAGACTCGCACACCCTCGGAGCTGGAATGCAGCCAGACTAACGGGGCCCTCTGCTTCGTTAACCCTCTCTTTCTAGAAGTGCATCGGCAGGAAGGAACCAGCGGGGGCTCGCTCAAGCGCCCCAAAACCCGAGATCCTGCTCCTTCCAGCAAGACTCGATCCCCCCCGCCCAGACCACCGCCACctaaaacacagagaaagccTCCTGTGAAGCAGGTGAGCATGCCCGAGACTGTCAGTTGGGTGAGAAAGCAGGACGAAGACCACGCCATGGGGAGCAAGCTGAACACCTCCAAGAAAAACAGCATGCCTATCCCTCCACCCCGAGTAAAGAAACAACTGAGCATGACTGACATGGAAAGAAGAAGGAATACTGCGCTGGATGACCAGATAATCCAGGAGGCCCTGACCCGAAGCCTGGCAAAATGTCCAAGACTAGGCACCAGCCCCAGCACAAACTCGCCGCCCCCCTCGCAGGACGCTGGGCAGGAGCGACAGAGTAAGAACGGCCGGCAGAGGCTGAGTGACATGAGCATCTCTACATCCTCCTCCGACTCGCTGGACTTCGACCGCAGCTTCGCCCTGCCCGACGGACCATCGGGGGCCGGCGACAGTAGCCTGGAGGAGGAGTATGGGGCCGAGAGCGACCAGGACATCAGCCCCCCGCCGCTCAAGACAAAGAAGAGGCACGGCACCACCTTCGTCCTACCCCGCGCCCTCAAGGGTCACCTGCGCAAGGTCAGCGGTGTCTTCAACTCCTTCATGACCCCCGAGAAGCGCATGGTGAGGAAGATCGCCGAGCTCTCCAAGGACAAGCGCACTTACTTTGGCTGCCTGGTGCAGGACTACATCAGCTTCCTGCAGGAGAACAAGGGCTGCCACGTCTCGGGGCTTGACATGCTGCAGACCATCCGCCAGTTCATGACCCAAAAAGCCATGCACAAGTGCATCCTGAAGCCCCTGAAGAGCCACATAGAGGCCAGCATGAAGGACTTCCAGATCACCAGTGGTTCGTGGAAGCAGCTGCGGGAGAACCTCGCCCTGGTCAAACAGAAGAAGCCCCAGGACCTGGGGGTGGACGCGGCCGCCCCAGACTCGGTGGTCATCGAGAAGATCCGCCACAAGTTCGACAACATGCGCAAGATGTACTCCCCAGAGAAGAAGGTCACGCTCCTGCTGAGGGTGTGCAAGCTCATCTACACTGTCATGGAGGACAGCTCAGGGAGGATGTACGGGGCTGATGACTTCCTTCCAATGCTGACGTACGTCTTGGCACAGTGTGACATGCCAGAGCTGGACACTGAGATTGAGTATATGATGGAGCTGCTGGACCCGTCACTTCTACATGGAGAAGGTGGTTATTACCTGACCAGCGCGTATGGAGCTATGTCTCTGATCAAAAACTTCCAGGAGGAGCAGGCGGCGCGGATCCTGAGCTCGGAGACGAGGAACACCCTACATCAGTGGCACCGGCGCCGCACCACCCAGCGTATCGCCCCTTCGGTGGACGACTTCCAGAATTACCTGAGGGTAGCCTTCCACGAAGTGAACAGTGGCTGCACAGCCAAAACCCTAATGGTGAGGCCCTACTCGACCACCGAGGAGGTGTGCCAGCTCTGTGCAGAGAAGTTCAAAGTTCAAGACCCTGAGAACTACACCCTCTTTCTCATCACAGAGGAGACCAGCCAGCAGCTGGCTCTAGACACCTACCCACAGAAGATCAAGGCTGAGATTCACAGCAGGCCCAACTCCCAGCCCTTCCATTTTGTCTACAAACGCCCCACCAACCTCAACATCTGCCTCCCGTCTGACGAGGAAAACGGAAACTGTCTTCCGAACTGAAACAACAAAGAGATCTTGGGAAGAGATCAGCACTTCTCAAGCTACATCTTTGCTTTGATGTTAAACTGTTAAGAGCTACACCTCCTTACgcttttgtatttttggagCTGCAGCCAGCTGACAAATGAATTGGGCATCAGGACTACTACAAGGAGGGAGTATCTTCAAGCCTCTGCTTTGAAACATTTGGATATTACGCGTGAACTTGCACTTTATgtcaaacagaaaaataaataaataaaagagatgCGGACACGTTACTACATAGGGTATTCAAGCAAGAGACCTCCAGTAACTTAACCTTTCAACTCAAATGGGGTTGTGCTGTATCAGTAGCCAACACCTTATTGGTTGTTGTACTTGTGACATTAGCAGAAGGCAGGCATCACACTGACACGGGTGTTGTGTATCAGGACGCTATCATATCGCTCAGTCAAACTTCCATTGACTTAAGTGGAACAGTTTTCTTAACAGATCTCAATAAAGAGAAATATTGTGTTCTAGGTTCTATGCTCTCTCTTTACTGTATCAGATTGTTAACGCAATCCCCTCCGCATGTGAACAGACCTCCTGCCGTGCCTTTCTAGATGGGTTCTATCCGTCTGCAAGACTGTAATGAAAAACTGACtgtgtcatttttttcattggAAAACATCACccttttgtatatgtatataagtatatattttttttatttagattcatgtttgtgttgcagTTGCAGGTAAACTGCGGGTTATGGGTTTTTAAGTCTTTATATAAATTGTTGGAATATTTCACATGTAATTAGTTTTGTCTTAGTGAGAACCCCTTATGAACCAGACATTGCtgagaattattattatctgagATAATGAATAATACTCATGTGCAAGATACTGAAGCCTActtaacaattacatttcaaaataaatttaaaatgtataaaaaataccTAGGTTCagacttttgcattttttgtgtgaaatgtattttcccaaATTCAATGTTGATGCATCAGTCTGGATTCCTTACACCTTGCGGAAGGTTAGAGGAAAATATGGAAGTACATCTGTAAGTGAATTGGCCAACCATATGTATTGTGTGTAGAAGCCACAACAATACAGGACCCCTTGACTTCACctgataacattttattttaaggataaCACGGGTGCAAACCTGTCCAAGTGGTTATATAACAATATGCAAACACAACCCAGGGTATTGCTCACCTGGGAAACCTGGTTCCTAAAGGGTTCAAGTTAACTCTCTTGCAGGTCTTAGAGTTAATAAGGCAGTGCCACAAAGTCTTGGTGTTATGGGTTTTCAGGAACAAGCTTTCTAAAAAGAATTTGTATCTTTTATATATGGAGCACAAACTCAATCTCCATACAAACACTGGCCTCTTGGGCAACTCTTTCAATTGCCAGATGTTCCTCAGCAGGGTGTTTTCCTCAAAGCGACTGATGTGAAGAAAGGTCAGTTAAGTGGGTGATGAAAAAGTGAAGGGGTTATGAAGAGTAGTATTCTGCTTAAAAGATTgacattcaaattattattattcaatctCTGACATAATTCAGGGTGTTGGaagcagtatttttttattctggtgACTGTATCCCAAATCAAGATCTAAAAAGCAACTGCTGAAATCACACATGACTCGACATGTATTAGAGAGCCTACAGCCATACATCAGGTTCATTTTGAGTGTTGCCAATTGAAACCACAATGTAAACTGGTCTAATGCAGGATATTGATTAGGCTGTAAGATGCGATTTCTCTTTtgacttaattaaatatttgaacataaacagaacattcaaaaacaccataacaaattaataaaacatgatccCGCTGTATTTATGCCACAAATACttctattcatttaatttatgtaaaagCAGATGTTGTGACTATGTTCAGTTGCATGTAAGCAGGTTCAGAAAGATTTATGAATGGATATTGTTTGAAAAGGCCGTGGTTTGGAAACTTGTAAGAATGAGAGAGGGAAATAGCCATTGTTATGTCAATAAACATTGTTAGAAACACTAAGCTTTTAGATGTATTTACGGTTAAAACATATTGAAGCACCTATTCGATATTTGATAGGTGTGTAGACAGACGACTaggatttatacatttgtattgtaggTTTTAGTGCTGTACttactgtcattttaatataatgaaatgtgtataagttttatatttatatatcatctGTGCAGGATTTTTCACAGATCACTTGTAATTTGTTATACACCTCAATGTAATGcgtgaaaatgtacttttccaCCAAAACGACAAGCTGTGTACTGGTCGTTTTTATATTCTGATGCCTTCCTGAAAACCCTCATTGTGGTTTTTACATACCCTGTAATGATTACATTTTGCACA

Function

GO: NA

KEGG:

id description
K23687 RIN2_3; Ras and Rab interactor 2/3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU200938 lncRNA upstream 827736 11625671 ~ 11647452 (+) True G159594
TU200801 lncRNA upstream 1035576 11436662 ~ 11439612 (+) True G159483
TU200738 lncRNA upstream 1253280 11217319 ~ 11221908 (+) True G159441
TU200653 lncRNA upstream 1503098 10969401 ~ 10972090 (+) True G159378
TU200652 lncRNA upstream 1503952 10969401 ~ 10971236 (+) False G159378
TU201143 lncRNA downstream 173617 12676811 ~ 12679489 (+) True G159775
TU201183 lncRNA downstream 282601 12785795 ~ 12876686 (+) True G159798
TU201187 lncRNA downstream 296315 12799509 ~ 12810735 (+) True G159800
TU201465 lncRNA downstream 1764194 14267388 ~ 14267722 (+) True G160024
TU201478 lncRNA downstream 1802831 14306025 ~ 14306260 (+) True G160036
AMCG00001692 mRNA upstream 26004 12425951 ~ 12449184 (+) True AMCG00001692
AMCG00001686 mRNA upstream 126793 12335024 ~ 12348395 (+) True AMCG00001686
AMCG00001691 mRNA upstream 141488 12329979 ~ 12333700 (+) False AMCG00001691
AMCG00001693 mRNA upstream 145705 12317845 ~ 12329483 (+) True AMCG00001693
AMCG00001690 mRNA upstream 366869 12088205 ~ 12108319 (+) True AMCG00001690
AMCG00001688 mRNA downstream 5084 12508278 ~ 12515505 (+) True AMCG00001688
AMCG00001689 mRNA downstream 13818 12517012 ~ 12520705 (+) True AMCG00001689
AMCG00001695 mRNA downstream 18295 12521489 ~ 12526395 (+) True AMCG00001695
AMCG00001698 mRNA downstream 283888 12787082 ~ 12792831 (+) True AMCG00001698
AMCG00001699 mRNA downstream 340970 12844164 ~ 12852723 (+) True AMCG00001699
TU201065 other upstream 143740 12329988 ~ 12331448 (+) True AMCG00001691
TU200393 other upstream 2560524 9913308 ~ 9914664 (+) True G159174
TU199983 other upstream 4313373 8159146 ~ 8161815 (+) True G158836
TU199853 other upstream 4541633 7933156 ~ 7933555 (+) True G158725
TU199783 other upstream 4728208 7746681 ~ 7746980 (+) True G158676
TU201467 other downstream 1766421 14269615 ~ 14270190 (+) True G160026
TU201667 other downstream 2828426 15331620 ~ 15334567 (+) False AMCG00001760
TU201717 other downstream 2929143 15432337 ~ 15439031 (+) True AMCG00001762
TU202121 other downstream 3734068 16237262 ~ 16295506 (+) False AMCG00001814
TU202141 other downstream 3866219 16369413 ~ 16372304 (+) False AMCG00001814

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000012_10958668_10973745.mRNA True 3145 mRNA 0.51 10 CI01000012 10958334 ~ 10973745 (-)