RNA id: AMCG00001572


Basic Information

Item Value
RNA id AMCG00001572
length 3793
RNA type mRNA
GC content 0.46
exon number 15
gene id AMCG00001572
representative True

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 7882716 ~ 7895972 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCGGACACTCGGCGGCGTGTGAAAGTCTACATGCTGAATGAAGACCGGCAGTGGGACGACAGGGGCACCGGGCATGTCTCGTCTACCTATGTCGAGCGGCTCAAGGGGATCTCCTTGTTGGTCCGGGCAGAATCCGATGGTTCGCTTCTATTGGAGTCTAAAATCAGCCCAAACACAGCATATCAGAAGCAACAAGACACCTTGATTGTCTGGTCGGAAGCGGAGAATTACGACTTGGCTCTGAGTTTCCAAGAAAAGGCCGGCTGTGATGAAATCTGGGAGAAGATTTGCCAGGTTCAAGGAAAGGATCCTGCGGTGGAAATTACCCAGGACCCCATCGACGAGTCGGAGGAGGAGCGCTTCGAGGAGATGCCCGAGAGCAGCCATCTGGTGGACCTCCCTCAGTGTGAATTGAACAAGCTGGAAGAGATCGCCGACCTCGTCACCTCGGTCTTGTCCTCCCCCATCCGCAGAGAGAAGCTGGCGCTGGCCTTAATGAACGAGGGCTACATCAAGAAGCTGCTGCAGCTCTTCCAGGTGTGCGAGGACCTGGAGAACACCGAGGGCCTGCACCACCTGTACGAGATCATCCGAGGAGTGCTGTTCCTCAACAAGGCAGCCCTGTTCGAGGTCATGTTCTCTGACGACTGTATCATGGATGTGGTGGGCTGTCTCGAGTATGACCCCTCTCTAGTGCAGCCCAAAAAGCACAGGGAGTTCTTGACCAAAACTGCCAAGTTCAAGGAGGTAATACCCATTACAGACTCCGAGCTGCGGCAGAAAATCCACCAAACGTACAGGGTGCAGTACATTCAAGACATTATCTTGCCAACGCCATCAGTGTTTGAAGAGAATTTTCTCTCCACGCTGACCTCCTTCATTTTCTTCAACAAAGTCGAGATTGTCAGCATGTTACAGGTCAACTTCTTTAAAGAGTTTTGTGCATTTTCACAAACATTACAGCCTCAGAACCGGGATGCATTTTTCAAGACGCTTGCAAATTTAGGGATTCTTCCTGCACTAGAAATTGTTATGGGCATGGATGACTTGCAAGTGAGGGCCGCAGCGACAGACATCTTTTCTTATTTGGTGGAATTTAGTCCGTCCATGGTTCGGGAATTTGTCATGCAGGAGCCTCAGCACAATGAAGATGACATCCTTCTGATCAACGTAGTCATTAAGCAGATGATCTGTGACACGGACCCCGAGCTGGGTGGAGCTGTCCAGCTGATGGGCCTTCTGCGCACCCTGATTGACCCGGAGAACATGCTGGCCCCTACAAATaaaacagaaaagactgAATTTCTCAGCTTTTTCTACAAGTTCTGTATGCATGTTCTGACTGCCCCTCTTCTGGCCAATACAGCTGAAGAAAAAAGCGTTAAAGATGGTGTGGTCGGACCCCCTAAGATCGGTGCTGTGTGTCCTGATAATTTCCAGACTGCCCAGTTGCTGGCCTTAATTTTGGAGCTGCTTACCTTCTGTGTGGAGCATCATACGTACCACATAAAGAACTATATCATGAACAAAGATCTGCTGCGGAGGGTCCTGGTGCTGATGAACTCCAAACACACCTTCCTGGCATTATGTGCGCTGCGCTTCATGAGGAGAATTATTGGCCTGAAAGATGAGTTTTATAATCGCTACATCATTAAAGGCAACCTTTTTGAGCCAGTGATCAATGCCCTCTTGGACAATGGAACAAGATACAATCTTTTAAATTCGGCTATTATTGAGCTCTTTGAATTCATCAAAGTGgaGGACATTAAATCCCTCATAGCACACATAGTTGACAACTTTTACAAAGCACTTGAGTCCATTGAGTACGTTCAGACCTTTAAAGGACTGAAGACCAGATACGAGCAGGAGAAGGACAGACAGAGTCAAAGACTCAACAGATACCGTCGGGACGCCAGGGCCATGGAGGACGACGAGGAGATGTGGTTCAATGAAGATGATGACGAGGAAGGCGAGGCAGTGCCTCCCATCGAGAAAAGCAAACCGGACGATGAATTTCCCGACAACTATGGGAAGTTCATTGAAGCAATAAAAgTTAAAGAAAGTGAGGACAAGGAGAATCTCCCCAAGAGGACCTCCAGTGGCAGCTTTAAGTTTACCTTCACTCATTCTGCAGCAGCAGCTAACGGCGCCAATGGTGCCAACAGCAAGTCTGTGGGTTCGCCCCCGTCGCCTGCCAGTCCCAACAGCTCCTCTGCCAAGTCCACCAACTCGCCAGCAACGGCCATGACTAAGGCAGGACTGGTGGGTCTCGTGGATTACCCAGatgatgaggaggaagaggaggaggaggaagagtcTCCACGGAAGCGACCCCGTCTGGGATCGTAAAGGCCTGGGCGCTGGAAAACGTGTAACAATGGTGCCCCTGTTCCACAGCCCACTGGACTGAGAAACCTctcctccccttccctcctccccccttccccctcctccAACACAACTACCAGGATAGAAGCCGACCAGAGGAGTAGCAAACAGGGTGCCAACGTTCCTGCTAGGCAAGCTTAGAGTCCCGGCAGGAGCTCCGCACCTCCCACGATCTGTGTCTTTTACAAGAGTGAGGGGAGCAGGGGTGGTGGGACGTCAATCAGGCTGGTAGGACTAGCGAGTTAGTAATGAAGGCCTGATTGGCTGAACCTCACAGCTATGGACCCTCACACTGACGGGAGgactacaggaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaatcacatttagtTCCAAGGAGCAGGACTCAGACTTTGAAACTTTTAGTCTCCTATTGAGGTGGCTAATGCTGGAACTATGTCAGTAAGGAATCCtgtattcataattttattaaaagtactgtacagtgtgttaatttttttttttttttttttaatcgtatATACCCCATGAAAATATTCCCAGGAACTAGACCTGCCTGACCGTTTTAGGTGGAACCACTGCTGACCCTTTTAATCGAGAAATTGAATTAGTTATCGTAAGCACAGTTGTAATGCTGGTTTTAAAACATTGGAACGGCAGTAAAGCGGCGTGTTTTGCTGTCCACGGGGAACATGGCGatcattttaatctgttttggCTGTTCGACTTACAGGTTTCAAGGTACCctcttatttacatttcttacaaGTGGTATATTTTTTAGGGAAACACTattttgataaaatatatatatatatatattgcaaaaatCAGGGACTTGAGAACCAGAATTGGGGTGCAACCGGTGCATTTAGAGTAGCAATTTTTTTAAAACCCTTCCGGAATTGTTAAACATGCTCGCCtctatttccttttaaatgaacaggacttgatttgtttgcatacaaATTCCAAGGTTctactttttagttttctttttaaacctaATGCAACTAATCCTTTAATTTGCAGAGGAAGCGCATCTCCAGACCCAGACTGTTCACCTGTACAGGTAGTAAGAGTGTGCTTCCTCAATCTGCAATGTAAACTTTCACAAGTTTAGCACTGGTTGTTAAACTAGCTACAGCCAACAGATACAGGCATTCCTATTGAGACAACTTAGTTTGGAAATGGTGAAAGCAAAGGTAAGAAGAGCATTTCAGACTAAATTAGTATGCCCAATTTGGGGAAGATCCTATAGTTCTGTGTAAGCATTTCAAATATAGGATGGctgtagaattttttttttttttttcttctgtaactTTTGTATAAATGAATGAACTGCCACTCTCCATTCTACaccatttgtatacatttgatattaaaaaaaaaaaaaaaaaa

Function

GO: NA

KEGG:

id description
K17491 SMEK, PPP4R3; protein phosphatase 4 regulatory subunit 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU199784 lncRNA upstream 129946 7752402 ~ 7752770 (+) True G158677
TU199782 lncRNA upstream 138683 7743558 ~ 7744033 (+) True G158675
TU199780 lncRNA upstream 141660 7740626 ~ 7741056 (+) True G158673
TU199778 lncRNA upstream 147106 7735276 ~ 7735610 (+) True G158671
TU199774 lncRNA upstream 151015 7729553 ~ 7731701 (+) True G158668
TU199836 lncRNA downstream 3471 7899443 ~ 7901353 (+) True G158713
TU199854 lncRNA downstream 37686 7933658 ~ 7933858 (+) True G158726
TU199855 lncRNA downstream 38001 7933973 ~ 7934875 (+) True G158727
TU199856 lncRNA downstream 39102 7935074 ~ 7935289 (+) True G158728
TU199857 lncRNA downstream 40300 7936272 ~ 7936478 (+) True G158729
AMCG00001573 mRNA upstream 1358 7871153 ~ 7881358 (+) True AMCG00001573
AMCG00001571 mRNA upstream 23301 7854144 ~ 7859415 (+) True AMCG00001571
AMCG00001556 mRNA upstream 89836 7774842 ~ 7792880 (+) True AMCG00001556
AMCG00001560 mRNA upstream 162605 7718794 ~ 7720111 (+) True AMCG00001560
AMCG00001558 mRNA upstream 171891 7696288 ~ 7710825 (+) True AMCG00001558
AMCG00001574 mRNA downstream 13226 7909198 ~ 7917326 (+) True AMCG00001574
AMCG00001577 mRNA downstream 26796 7922768 ~ 7923494 (+) True AMCG00001577
AMCG00001576 mRNA downstream 27554 7923526 ~ 7928887 (+) True AMCG00001576
AMCG00001575 mRNA downstream 44162 7940134 ~ 7962377 (+) True AMCG00001575
AMCG00001567 mRNA downstream 80115 7976087 ~ 7995881 (+) True AMCG00001567
TU199783 other upstream 135736 7746681 ~ 7746980 (+) True G158676
TU199779 other upstream 144826 7736515 ~ 7737890 (+) True G158672
TU199730 other upstream 202933 7671314 ~ 7679783 (+) True AMCG00001550
TU199732 other upstream 202933 7671314 ~ 7679783 (+) False AMCG00001550
TU199601 other upstream 854575 7023388 ~ 7028141 (+) True G158537
TU199853 other downstream 37184 7933156 ~ 7933555 (+) True G158725
TU199983 other downstream 263174 8159146 ~ 8161815 (+) True G158836
TU200393 other downstream 2017336 9913308 ~ 9914664 (+) True G159174
TU201065 other downstream 4434016 12329988 ~ 12331448 (+) True AMCG00001691
TU201467 other downstream 6373643 14269615 ~ 14270190 (+) True G160026

Expression Profile