AMCG00001603 (memo1,LOC107654980,LOC107705412)


Basic Information

Item Value
gene id AMCG00001603
gene name memo1,LOC107654980,LOC107705412
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 8748296 ~ 8758510 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001603
CAACCCGTCTCGACCATCGCACGGTAGCCGAGTTATGCCAAACCAAGACCGGCGAACAGTGCGTTTCCAGCAGTAAAGCGAGAAACTGGCTTTTGGTTTTTGttctcccccccaaaaaaaacaatctctccGTTAGACtttaaagtttttcttttctttttctgttgttatctatttttaattattccacATCAGTCTAAAGACGATACATATTGACGCTTCGAGTCCCCCCTTTCTGATCCATACAGGaccctgtgtttgtttgtgtttttcgttactgtttttcttttcttttttgactttttttttccccgatAAGGTTTTAAGTGACCAAGATAGGCGGCTCGGGCACTAAGATGTCGAACCGAGTGGTGTGCAGAGAAGCAAGTCACGCCGGCAGCTGGTACACCGCCTCAGAATCCCAGCTGAATGCACAATTAGAAGGCTGGCTATCTCAAGCGCAATCCACAAAAAGACCTGCTAGAGCCATTATCGCACCGCATGCTGGCTATACCTATTGTGGAGCCTGTGCAGCATATGCCTATAAACAGGTGGATCCAACCATTACTAGAAGAGTTTTTATCCTAGGACCCTCGCACCATGTACCGCTGTCTCGCTGTGCACTTTCACCTGCTGAGATCTACAGAACACCGCTGTACGATCTGAGGATTGACCAGAAGGTTTATGCTGACCTTTGGAAAACGGGGATGTTTGAACGCATGAGTTTGCAAACGGACGAAGACGAGCACagtattgaaatgcatttgcctTACACTGCTAAAGCTATGGAAAGCCATAAAGATGACTTTGCAATTGTCCCTGTTCTTGTGGGTGCTTTGAGTGAATCCAAGGAGCAGGAATATGGGAAACTTCTCAGTAAATACTTGGCGGATCCTAGTAACCTCTTTGTGATTTCGTCCGACTTCTGCCATTGGGGTCAGCGATTTCGTTACACATATTATGATGAATCCCAAGGGGAGATCTACAGATCTATCGAGCACCTTGACAAAATGGCTGTAGCAGAGCTGAAGAAGAACGGAGTGGACATGAATTTCTCTTTCCTAAACTATGCCCAGTCGAGCCAGTGCCGGAACTGGCAGGACAGCTCTGTGAGTTACGCGGCTGGAGCGCTGATCGTCCATTGAGAGCAAGGCACCTCAGGACGCCACTCGTACCCGCTGGCTCCGCCTCCCTACCCCCAGCCCCGGCCCCAGCCCCGGCCCCAGCCCcggccccagccccagccccagcctcGCCCTTTGGAGAGACTCGGATAGTTCAAAGTGCTTGGGTatcttatattaaaaaaaatataaaaataaatatatatgtatatccccccctccccacccactttttatttttctttcctcttttcatATCAGGGTTCCCACACATCCTGGAAAATTGTAAGAAACTCTGGGCCTGGAAGAGTAATGATTACGTTCAGGATGTTTTCTTAGTATTACCAGTGACTGCTGTGTATTAAATCTGGTCATAAATGCTGGATGAGATTACGTCACCGTTTGTGGTTTCATGACATTTCAGTGAAAGGGTGAGCAGAAGTTTAATCCCAATCAAATGGTAATGATGctttcattagttttaattGGGACTGTGCTCTGTACTAAGCTAGAAATTCTTACTGATAAACCTCTGCAGTATGAAGGCCAAAGCGTAGGGTCTACAGATGAAACTGCTATAGGTCTGCTTGCTGTTTAagctaaacacacacatttacatccTGTTTTGTACAGAGGTCATTTTTCTTGTCTAGTCCTTTCTGTTACATGAAGCTCGCACGAAGAGCTTAGACCAATAATATTCCTCTAGTTCTAGTACAGAAGAGGTCCATTAGTGTGATGCAATCGTTCTGCCATTTAGGCGCCACATTTCCATTTGCGGTTGGGGGGGCAGCAGAGAAGGCTGCAGGGATCAAGTAGTCATAAACTTAACTTGCAATAGGTACCACCTGGGTCAGAATATGAATCTTGGCAAAGCACAGCAGTACCAAAGTACGATTTTAACCGAAATGTTCAGGTTTACAATTGACCGTGATATGACACTGTGGTAAGCTAAAATTGAAGACGCACAATGATGGGTGTGAGGGGTGCTGAGGATGCTCATAAAAGCCTTTGTGTAAAATCGCTGAAATGTCATGGGAAAGGtcctggaaaacaaaagagTGGGAACCCTGTCATTAAAGCTGTCCAGCCTAGGTTGTGttggttaaaacaaaaatataagtactttttgttgtgtgtgtgtgtgtgtgtgtgtgtgtagggtggTCAGAGGAGTAAGGCTGGCATACAGTGTGAGCAGTAAACATTTCCGATTCTGCCGTGTTGGATGCGGGGTTGCCCGGGTTCGAAGACTGTGCAGCCCTTGTTTCCAGTTACcaattatttatcttgtttGCACTCTATTGCAGACCTGTGCACATGTACTCCGCTTCAGAGGTTAGTTCTGCATGATTGTAATGGGAAGACACGAGTGGAAGCTTATTAAAGAATCcagaaataagaaaaactgATCTATTAGAATTCTATGTTCTTTTGGAACCTGTGAATAGCAGACTAGGTAGCTACTGCCATCATTGTACAACAGGAACCTACTCTTGTAGTTGCTAATAAAGGGCTACACACAACCAAGTCCACTAACATTTCTGCTGTACAATCtataccaaaaaaacaactcaatttttaaatttatttttactttactttatgaTTAGCTAATTAAAAGTGTGATTTCTGCCAttcttctttgctttttctttcctcttttcccTTAATCATTTGTTTGGGATTGAACCTCTAACAATTGGTAACAGTTTTGATGTTGACACTGGTGTCAGTCTACTAAAACATTATAATCATTGATTGTACAccttaacatgtttttttttgcagttctAGATTTGTCCTGGTTATAGTGTGAGGCTAGCCGTAAGGCAAGGTTACTCCAAGGGGTTTTCTCTGATTGAATCAAGGGAGTTGGCGTCTGAGTCCAAGAACCTCTGTCTCTGTGAGAGAAACTCAATTGCTATACAGTGGAGTTTGTATTATCTCAGGTTCAATTGATAAAGCACCCAGTATACTCTACAGATATGATCTACtagctgaaatgttaaaaacaaaacgaaacaaaaacagtaaaatgcTGAAACGCATTGTTTGCCCCGTGTCTTTTGTTTGAACCCGTTTCTTCTGCACACGTCCAGGTACATGAAACGTACAGTAGGGAGATGCACTTTAAAGCAACTCATTAAACTGTATGGCATTCAGGTGTTCAATTATCACAAAGACCTTTCCTTGAATTTGACCCTCTAATTAGGAGTGTTGTAACCAAGTCCATTTCCTCAATAGGCCAATTCCCTCGGTAGCACAATTTAAAGTTGAATACAACTTTTCTATGGAAACCCAGCTTGCAATTTCATCCAAacataatcaatttaaaaataagcttttattACCTTTCCAAATTATCTGATAAACCTTTTGAAAGGATGGTTGAATACTATGGTGATAATATTGTAACCCAAAATCCACTCATGCCAGAAGGGAGATTTGTTCCTGGATCTACACAGGGTAAATCTAATGGATGAGATGCACATTCATCAGCACCAATGTAGTTTTGACAAGCTGAGCacaggctgggattaaatcaagtTTGACTGATCCACTAATCACCAGTTACACACTTGTACTCAATGGTGGCTTTTGTTCTTGACGGAG

Function

symbol description
memo1 Is expressed in Kupffer's vesicle; central nervous system; epiphysis; tail bud; and telencephalon. Orthologous to human MEMO1 (mediator of cell motility 1).

NR:

description
PREDICTED: protein MEMO1-like

GO: NA

KEGG:

id description
K06990 MEMO1; MEMO1 family protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001603 True 3740 mRNA 0.43 8 8748296 8758510

Neighbor

gene id symbol gene type direction distance location
AMCG00001605 LOC106564822,LOC106586224 coding upstream 8274 8738472 ~ 8740022 (+)
AMCG00001606 NA coding upstream 82635 8659527 ~ 8665661 (+)
AMCG00001599 LOC106564825,LOC108430145 coding upstream 116835 8606654 ~ 8631461 (+)
AMCG00001602 strn,LOC102790911,LOC102314492 coding upstream 173279 8570684 ~ 8575017 (+)
AMCG00001600 heatr5b coding upstream 180340 8541363 ~ 8567956 (+)
AMCG00001604 NA coding downstream 4611 8763121 ~ 8774091 (+)
AMCG00001610 NA coding downstream 46811 8805321 ~ 8815317 (+)
AMCG00001614 NA coding downstream 188903 8947413 ~ 8966738 (+)
AMCG00001613 btbd3 coding downstream 259356 9017866 ~ 9028794 (+)
AMCG00001617 LOC107600566,LOC107654988,LOC107662809 coding downstream 335259 9093769 ~ 9135363 (+)
G158857 NA non-coding upstream 443456 8302550 ~ 8304840 (+)
G158837 NA non-coding upstream 491107 8165773 ~ 8257189 (+)
G158823 mrpl14 non-coding upstream 645881 8101451 ~ 8102415 (+)
G158788 NA non-coding upstream 709755 8035301 ~ 8038541 (+)
G158771 NA non-coding upstream 748584 7997910 ~ 7999712 (+)
G159041 NA non-coding downstream 18427 8776937 ~ 8777745 (+)
G159101 NA non-coding downstream 451610 9210120 ~ 9214347 (+)
G159142 NA non-coding downstream 557601 9316111 ~ 9369910 (+)
G159170 NA non-coding downstream 1104450 9862960 ~ 9863228 (+)
G159169 NA non-coding downstream 1110658 9869168 ~ 9869603 (+)
G158836 NA other upstream 586481 8159146 ~ 8161815 (+)
G158725 kat14,LOC106584902 other upstream 814741 7933156 ~ 7933555 (+)
G158676 NA other upstream 1001316 7746681 ~ 7746980 (+)
G158672 NA other upstream 1010406 7736515 ~ 7737890 (+)
AMCG00001550 NA other upstream 1068513 7671314 ~ 7679783 (+)
G159174 NA other downstream 1154798 9913308 ~ 9914664 (+)
AMCG00001630 NA other downstream 1399224 10157734 ~ 10159826 (+)
AMCG00001643 spred2 other downstream 1896677 10655187 ~ 10677854 (+)
AMCG00001645 NA other downstream 1988979 10747489 ~ 10757858 (+)
AMCG00001691 NA other downstream 3571469 12329979 ~ 12333700 (+)

Expression


Co-expression Network