XLOC_006764 (cst3)


Basic Information

Item Value
gene id XLOC_006764
gene name cst3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 33675556 ~ 33683913 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00013022
CTCAGACCAGATTTATTTATGCTTTCGACTTGCTGACATAACAAGGAAGGATCAAGACCGTTCGATTCAATATTTACAGTTCGaccatgtttcttaaaataattgTGGCGTTCTTGGCGGTGATTTTGACCGTGTCGAGCGCTGGGCTGGTCGGAGGACCAACGGATGCGGATATGGACAAAGATTCTCAGAGTGCGCTACAGTTCGCAATGGCCCAGTACAACAGACAAAGCAATGATGCGTATGTGAGAGGTGTTTCCAAAGTCACCAAGCTCCAAAAACAAGTTGTTGCTGGGATTAAATACATCTTCACCGTGGATGTGGCCAGAACCACTTGCAGAAAGGGTGGAGTTGAGGAGCTGTGTGCTATTCATGAGAACCCAGAAATAGCACAGGTCAAGGAATGCAAAATAGTGGTCTGGACCAAGCTATGGGAGAACTTTATTAAGGTGAGCGCTGAATTTTCACAGCTGGATCTTCACAGCTGCTGAGGAACTATTGGAGTAAGACAGAGATCTGAGACTTAAGTTGGACAATGAACTGACAGGAACTGAACGGCTTGTGATGGCAGAAATGTTGACCTAAACAGGGGCCTTCTACAAGTGACCGCCTAAAGACACTggcatcatcattatcatcattatcatcattatcatcattggAAGTGTTAAAGTTCTTATAGACCTCATCTTTACCAGACTAAGGCAAACTCTGCTTTT
>TCONS_00013023
AGAATGACGTTTTGCTTATATAATCTCAGACCAGATTTATTTATGCTTTCGACTTGCTGACATAACAAGGAAGGATCAAGACCGTTCGATTCAATATTTACAGTTCGaccatgtttcttaaaataattgTGGCGTTCTTGGCGGTGATTTTGACCGTGTCGAGCGCTGGGCTGGTCGGAGGACCAACGGATGCGGATATGGACAAAGATTCTCAGAGTGCGCTACAGTTCGCAATGGCCCAGTACAACAGACAAAGCAATGATGCGTATGTGAGAGGTGTTTCCAAAGTCACCAAGCTCCAAAAACAAGTTGTTGCTGGGATTAAATACATCTTCACCGTGGATGTGGCCAGAACCACTTGCAGAAAGGGTGGAGTTGAGGAGCTGTGTGCTATTCATGAGAACCCAGAAATAGCACAGGTCAAGGAATGCAAAATAGTGGTCTGGACCAAGCTATGGGAGAACTTTATTAAGGTCACTGAAAACTCCTGCCTGTAGAGAATGCTCCTGTTGCAGTTTGAAGCTTTTCGACACTCTAAGAGCAATATAACTCCTTAATATTGCTTAATTTCTTAATTAATTTcttaattgattaaattatttactaTCGATAcaataggaatatatatatagttgaagtcaaaatatttttttctttaaaaatatttcccaagtgttgtttaatAAAGATaagatttttctcaacacatttttaaacccaaaaaaggttttaaaaatagttttaaaatgttttaatgattaaaattattttaataacttattattttgtctttaccatgatgacagtatttacTAGTTACTAGTTATTTTACTGGAAACtaatattcagtttaaagtgcaatttaaagacttaactaggttaatcagatTAACTAAGTTAGGTTATTTAGCCAAGCTATTGGAtgactgtggtttgttctgtagtcaactgaataaatatatatatatatatttctttgggggctaataatattatccttaaaaaaagtttataaaaatgtatttcagctaaactaaaagaaataagatatTCCCCAGAAGAAACAGGAACTACTGTGAAAAATGAAttggtctgttaaacattacttggaaaaatatttgaaaaataatagaaatttcacaagagggctaatgatttcgacttcaactgtgtatataaatgCTTCACTAACACATAAATGTGCAATCTCATAAATGTGTAATGCTCTGAAAGATCTACAATTTGTAAGAAATTCTAAATAATAAGCCGCatggttttatttttgttcatccTTTGCTAAATAAAAGATGGTTGAACAAG
>TCONS_00013024
GCTTTCGACTTGCTGACATAACAAGGAAGGATCAAGACCGTTCGATTCAATATTTACAGTTCGaccatgtttcttaaaataattgTGGCGTTCTTGGCGGTGATTTTGACCGTGTCGAGCGCTGGGCTGGTCGGAGGACCAACGGATGCGGATATGGACAAAGATTCTCAGAGTGCGCTACAGTTCGCAATGGCCCAGTACAACAGACAAAGCAATGATGCGTATGTGAGAGGTGTTTCCAAAGTCACCAAGCTCCAAAAACAAGTTGTTGCTGGGATTAAATACATCTTCACCGTGGATGTGGCCAGAACCACTTGCAGAAAGGGTGGAGTTGAGGAGCTGTGTGCTATTCATGAGAACCCAGAAATAGCACAGGTACATAACACAAATCTTATTTACATTTAGGAGGTTATCCCTGTACATTCCTCtgtttttcataaaatatatctttatttacTTTTAGGTCAAGGAATGCAAAATAGTGGTCTGGACCAAGCTATGGGAGAACTTTATTAAGGTCACTGAAAACTCCTGCCTGTAGAGAATGCTCCTGTTGCAGTTTGAAGCTTTTCGACACTCTAAGAGCAATATAACTCCTTAATATTGCTTAATTTCTTAATTAATTTcttaattgattaaatta

Function

symbol description
cst3 Predicted to enable cysteine-type endopeptidase inhibitor activity. Predicted to be active in extracellular space. Human ortholog(s) of this gene implicated in CST3-related cerebral amyloid angiopathy and age related macular degeneration 11. Orthologous to human CST3 (cystatin C).

GO:

id name namespace
GO:0005615 extracellular space cellular_component
GO:0004869 cysteine-type endopeptidase inhibitor activity molecular_function

KEGG:

id description
ko04970 Salivary secretion
ko01002 Peptidases and inhibitors
ko04147 Exosome

ZFIN:

id description
ZDB-GENE-030131-373 Predicted to enable cysteine-type endopeptidase inhibitor activity. Predicted to be active in extracellular space. Human ortholog(s) of this gene implicated in CST3-related cerebral amyloid angiopathy and age related macular degeneration 11. Orthologous to human CST3 (cystatin C).

Ensembl:

ensembl_id ENSDARG00000007795

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00013022 False 719 mRNA 0.44 5 33675556 33683889
TCONS_00013023 False 1320 mRNA 0.33 3 33681875 33683913
TCONS_00013024 True 643 lncRNA 0.41 2 33682596 33683869

Neighbor

gene id symbol gene type direction distance location
XLOC_006763 zgc:163030 coding downstream 3862 33669936 ~ 33671694 (-)
XLOC_006762 si:dkey-76k16.5 coding downstream 7634 33665305 ~ 33667922 (-)
XLOC_006761 si:dkey-76k16.6 coding downstream 13033 33658871 ~ 33662523 (-)
XLOC_006760 snx5 coding downstream 20625 33645413 ~ 33654931 (-)
XLOC_006759 rrbp1a coding downstream 36506 33611703 ~ 33639050 (-)
XLOC_006765 mad2l1bp coding upstream 11765 33695678 ~ 33700461 (-)
XLOC_006766 flrt3 coding upstream 127929 33811842 ~ 33822550 (-)
XLOC_006767 kif16bb coding upstream 943637 34627550 ~ 34683370 (-)
XLOC_006768 BX649403.1 coding upstream 954716 34638629 ~ 34638746 (-)
XLOC_006769 BX649403.2 coding upstream 960237 34644150 ~ 34644281 (-)
XLOC_006471 BX537274.2 misc downstream 23410651 10264741 ~ 10264905 (-)
XLOC_006338 rn7sk misc downstream 32849331 825904 ~ 826225 (-)
XLOC_006757 NA non-coding downstream 211912 33452438 ~ 33463644 (-)
XLOC_006758 NA non-coding downstream 216238 33457523 ~ 33459318 (-)
XLOC_006752 NA non-coding downstream 374386 33261131 ~ 33301170 (-)
XLOC_006741 NA non-coding downstream 679060 32946711 ~ 32996496 (-)
XLOC_006738 CU019663.1 non-coding downstream 867915 32793864 ~ 32807641 (-)
XLOC_006773 CR932983.2 non-coding upstream 1499081 35182994 ~ 35194759 (-)
XLOC_006774 NA non-coding upstream 1521384 35205297 ~ 35289437 (-)
XLOC_006775 CU138575.1 non-coding upstream 1686656 35370569 ~ 35370684 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000012_07104155_07105373 NA coding CI01000012 null 7104062 ~ 7105580 (+)