XLOC_006760 (snx5)


Basic Information

Item Value
gene id XLOC_006760
gene name snx5
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 33645413 ~ 33654931 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00013015
GTGACAGGCGAGAGGGAGGAAAGTGAGGAACGAGCTTGCTGCTGGAAAGTTAAAAGTGCAGTTTAATGTACAACCCAGAGCCGATAAAATAAGCGAAATATCTCCTGAACATGACGTCTATTTCAGAGGACAGCGATAAGGAGAAGGCACGTTCTGTATCTGTTGACTTGAACAATGATGCATCTCTCCTCATTGATATTCCTGATGCCCTCTGTGAAAGGGACAAAGTCAAATTTACCGTCCACACCAAGACCACACTTAGTTCCTTTCAGAAGCCGGACTTTTCTGTGCCACGACAGCATGAAGATTTCATCTGGCTCCATGATGCAATTGTGGAGACTGAGGAATATGCTGGCCTCATTATCCCTCCTGCCCCACCAAAACCTGACTTTGAGGGTCCCCGAGAGAAGATGCATAAGCTGGGAGAAGGGGAGTCAAGCATGACAAAGGAggaatatgccaaaatgaagcagGAACTTGAGGCGGAATATCTTGCTGTTTTTAAGAAGACTGTGCAGGTTCATGAAGTGTTTCTTCAGCGACTTTCCTCCCATCCCAGCTTCAGCAAGGATAGAAACTTCCACATATTCCTGGAATATGACCAGGATCTCAGCGTGAGGCGGAAAAATGCCAAGGAAATGTTTGGTGGTTTCTTTAAGAACATGGTGAAGACCGCTGATGAGGTCCTCATCTCAGGGGTCAAGGAGGTTGATGAGTTCTTTGAACAGGAGAAGACTTTTCTGCTGGATTACTCTAATAAAATCAAAGATTCCACAGCTAAGGCTGAGAAAATGACCCGTTCACACAAAAATGTTGCTGATGATTATAACCACATTTCCGGGGCTCTGAACAGTGTTGCAGCTGACAACAACTCTGCCTTTAAAAAGCACTTGGAAAAATGTGTTGAAGTATTTGAAAAGCTTAGAaAAGTCGAGGACAGGGTGGCATCAGATCAGGAGCTCAAGCTGACAGAATTGTTGAGATACTACACAAGAGACATCCAAGCTGCTAAGGACCTGTTGTATAGACGTGCACGGGCACTTGCAGATTACGAGAATTCCAATAAAGCTCTCGACAAGGCACGTCTAAAAGGAAAAGATGTCCCACAGGCTGAGGAGAACCAGAAGCAGTGTCTTCAGAAGTTTGATAGGCTTTCAGAATCTGGCAAGAAAGagCTCACCAGCTTCAAGGCAAGACGTGTAGTAGCCTTTCGTAAGAACCTGATCGAGATGACTGAGCTGGAAATAAAACATGCCAAGAACAGCATGTCCACTCTGCAGGGCAGCATTGAGCTGCTGAAAAGCAACTGACCCACACGATGATGACGTCGCTGCACCATCGTGAGCTCCTAGCATTGTTACCTGCCCATTAGAGTGAAACCTAAATGCACCTACTTCAGTTATCCCTAACGTGGTTCACTAACCACTTTAAAACATGAAAAAGAGCAACTGCAGTGTTTACACTTTGCCTCGTTTTTTCCTGCTTATGTTCTTTTTCACTGCCAGTACCATCTCATGAAATTAATGCAGTGATTACAACCTGAAAGCTCTCTAATATGTTCACTTATGAGTTGTTAAATCCCTGCATTAGCCGCCGTTTTTTACATATTCCAAGTTATGCAAATATTAGCTGATATATTCTATCTGAGATTATGCAGACACATAAAGTACCACTATGACAACAAGTGGATCATTTCAGTgatttttctgctgttttgactgcagttttgtacctttaaatgtgattaatctgCCTTTTTTCTGGCACACTGGAAAGCTGATGCGTACTAATCATAAACTATTAAACAAAACTTGACCTGTGATGAGAAACAGAGCAGTATATCAGAAGTGTTATGTGAAATGTAATGCTTCAGATATCTTTCCTcctaatatttttttgttgatttgAGATTCGTCCGAATGCATTACTCTGCATTACAGATTGCTGCACACAAATGTACGTTTCAAGAGAATGCTGACGTTAATTTACGATCACATTTTTTGCCAAATTACACTTCCTTTTACTTTAAATGAAAAGGACTGACTGATGTCCCCAGTTGTTGTGTGTGaaatgaggtaaataagtgaGTATCAGTAGTAATAGTTCATCATATTGTTTATGGTTTACACAGTAATGAATAAGATGGTGCTTCCATTTATGTGTATGCAAGAAACTGTTTTCCTCAATTAAGCTACGTTTCCACAGAACTCATCCTTTTCTGAAAACTCAAGTTCAATTTGATACTTTCGACACCTTTTCTATTGGATATAAATCAGCGTTCcttattcaaatgtattttttactcCGCTAAATGTTGTTACTAAAACTCTAAGACTTGCTACATTTAAGTTCAGTGGACCAAAATATGTGTTAAGTTTGGTTTTGTGGAGTGCCACAAAAATATGTAACTGCTGTTCTGATTATGGAGATTATGTTTTGTAAAGCACTATTGCAATCACGTGCAACTCAGCGAAGATAAattttataaatgactgaaaagaTGGGACGTCATTTTCGTATGGATTACCCTTATTTTTATGAAAGCTtgcaataaatgaaaataaatattcccTGTTTTCCCA

Function

symbol description
snx5 Predicted to enable dynactin binding activity and phosphatidylinositol binding activity. Acts upstream of or within several processes, including Notch signaling pathway; animal organ development; and blood vessel morphogenesis. Located in early endosome. Is expressed in several structures, including cardiovascular system; hematopoietic system; mesoderm; optic tectum; and presumptive blood. Orthologous to human SNX5 (sorting nexin 5).

GO:

id name namespace
GO:0030097 hemopoiesis biological_process
GO:0006886 intracellular protein transport biological_process
GO:0006907 pinocytosis biological_process
GO:0007219 Notch signaling pathway biological_process
GO:0048514 blood vessel morphogenesis biological_process
GO:0042147 retrograde transport, endosome to Golgi biological_process
GO:0015031 protein transport biological_process
GO:0060041 retina development in camera-type eye biological_process
GO:0042063 gliogenesis biological_process
GO:0005768 endosome cellular_component
GO:0005769 early endosome cellular_component
GO:0034452 dynactin binding molecular_function
GO:0005515 protein binding molecular_function
GO:0035091 phosphatidylinositol binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2857 Predicted to enable dynactin binding activity and phosphatidylinositol binding activity. Acts upstream of or within several processes, including Notch signaling pathway; animal organ development; and blood vessel morphogenesis. Located in early endosome. Is expressed in several structures, including cardiovascular system; hematopoietic system; mesoderm; optic tectum; and presumptive blood. Orthologous to human SNX5 (sorting nexin 5).

Ensembl:

ensembl_id ENSDARG00000020442

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00013015 True 2582 mRNA 0.40 13 33645413 33654931

Neighbor

gene id symbol gene type direction distance location
XLOC_006759 rrbp1a coding downstream 6363 33611703 ~ 33639050 (-)
XLOC_006757 NA coding downstream 181769 33452438 ~ 33463644 (-)
XLOC_006758 NA coding downstream 186095 33457523 ~ 33459318 (-)
XLOC_006756 btbd6a coding downstream 246678 33394116 ~ 33398735 (-)
XLOC_006755 zgc:172120 coding downstream 283222 33342455 ~ 33362191 (-)
XLOC_006761 si:dkey-76k16.6 coding upstream 3940 33658871 ~ 33662523 (-)
XLOC_006762 si:dkey-76k16.5 coding upstream 10374 33665305 ~ 33667922 (-)
XLOC_006763 zgc:163030 coding upstream 15005 33669936 ~ 33671694 (-)
XLOC_006764 cst3 coding upstream 20625 33675556 ~ 33683913 (-)
XLOC_006765 mad2l1bp coding upstream 40747 33695678 ~ 33700461 (-)
XLOC_006471 BX537274.2 misc downstream 23380508 10264741 ~ 10264905 (-)
XLOC_006338 rn7sk misc downstream 32819188 825904 ~ 826225 (-)
XLOC_006752 NA non-coding downstream 344243 33261131 ~ 33301170 (-)
XLOC_006741 NA non-coding downstream 648917 32946711 ~ 32996496 (-)
XLOC_006738 CU019663.1 non-coding downstream 837772 32793864 ~ 32807641 (-)
XLOC_006768 BX649403.1 non-coding upstream 983698 34638629 ~ 34638746 (-)
XLOC_006769 BX649403.2 non-coding upstream 989219 34644150 ~ 34644281 (-)
XLOC_006773 CR932983.2 non-coding upstream 1528063 35182994 ~ 35194759 (-)
XLOC_006774 NA non-coding upstream 1550366 35205297 ~ 35289437 (-)
XLOC_006775 CU138575.1 non-coding upstream 1715638 35370569 ~ 35370684 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000012_07120539_07126148 SNX5 coding CI01000012 null 7120539 ~ 7126272 (+)