CI01000012_07120539_07126148 (SNX5)


Basic Information

Item Value
gene id CI01000012_07120539_07126148
gene name SNX5
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 7120539 ~ 7126272 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000012_07120539_07126148.mRNA
GTGCGTTCTGTATCAGTGGACTTGAACCATGATGCATCTCTCCTCATTGATATCCCTGATGCCCTCTGTGAACGTGACAAAGTCAAATTTACCGTCCACACCAAGACCACACTTAGTTCCTTTCAGAAGCCAGATTTTTCTGTGCCACGCCAGCATGAAGATTTCATCTGGCTCCATGACACAATTGTGGAGACTGAAGATTATGCTGGGCTCATTATCCCTCCCGCCCCACCAAAACCTGACTTTGAGGGTCCCCGGGAAAAGATGCATAAATTGGGAGAGGGGGAATCGAGCATGACAAAGGAAGAATACGCCAAAATGAAGCAGGAACTTGAAGCAGAATATCTTGCTGTTTTTAAGAAGACCGTGCAGGTTCATGAAGTTTTTCTTCAGCGACTCTCCTCCCACCCCGTCTTCAGCAAGGACAGAAACTTCCAGATATTCCTGGAATACGATCAGGAAGTGAGTCTTCCGCTTTGTCTAGGCCAGTCCTGTTCATCCCAGACCAGGAAACAGAGAGACAGTGAGAGGGACTGTTGGCATTGCTTATTTCCTGTGAAGCTGCAATGTTGGCAGTTTACACACAAATGGAGAGAGCTCACCGTAAGGAGGAAAAATGCCAAGGAAATGTTTGGTGGGTTCTTTAAGAACATGGTAAAGACTGCTGATGAGGTCCTCATCTCAGGGGTCAAGGAGGTTGATGAGTTTTTTGAACAGGAGAAGACTTTTCTGTTGGATTATTCCGGTAAAATCAAAGACGCCACTGCTAAAGCTGAGAAAATGACCCGTTCACACAAAAATGTTGCTGATGATTATAACCACATTTCTGGGGCTCTGAACAGCACTGCTGCAGACAACAATAACTCTGCCTTTAAAAAGCACTTAGAAAAATGTGCCGATGTGTTTGAAAAGCTTCGTAAAGTGGAGGACAGGGTGGCATCAGATCAGGAGCTCAAGCTGACAGAATTGTTGAGATACTACACAAGGGACATCCAGGCTGCTAAGGACCTTTTGTATAGACGTGCACGGGCACTTGCCGATTACGAGAATTCCAATAAAGCTCTTGACAAGGCTCGTCTGAAGGGTAAGGACATTGCTCAGGCTGAGGAGAACCAGAAGCAGTGTCTGCAAAGGTTTGACAAGCTCTCCGAGTCTGGCAGGAAAGAGCTCACCAGCTTTAAGGCAAGGCGTGTAGTAGCCTTTCGTAAGAACTTGGTTGAGATGACTGAGCTGGAAATAAAACATGCCAAGAACAGTGTGTCCCTTCTGCAAGGCAGCATTGAGATGCTCAAAAGCAACTGACCCACACGATGAGTTCACTGGACCAGCTTGAGCTCCTTGCATTGTTACCAACCCATTAGAGGGGAACCTGGATGCACCTACTTTAAATGTCCTTAATGTGGTTCAATAACCACTCTAAAACATA

Function

symbol description
snx5 Predicted to enable dynactin binding activity and phosphatidylinositol binding activity. Acts upstream of or within several processes, including Notch signaling pathway; animal organ development; and blood vessel morphogenesis. Located in early endosome. Is expressed in several structures, including cardiovascular system; hematopoietic system; mesoderm; optic tectum; and presumptive blood. Orthologous to human SNX5 (sorting nexin 5).

GO:

id name namespace
GO:0007219 Notch signaling pathway biological_process

KEGG:

id description
K17920 SNX5_6_32; sorting nexin-5/6/32

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000012_07120539_07126148.mRNA True 1426 mRNA 0.46 12 7120539 7126272

Neighbor

gene id symbol gene type direction distance location
CI01000012_07111569_07113225 NA coding upstream 7307 7111569 ~ 7113232 (+)
CI01000012_07108281_07109521 NA coding upstream 10617 7108281 ~ 7109922 (+)
CI01000012_07104155_07105373 NA coding upstream 14959 7104062 ~ 7105580 (+)
CI01000012_07089179_07092023 NA coding upstream 28509 7088483 ~ 7092030 (+)
CI01000012_07038865_07063702 NA coding upstream 56534 7038754 ~ 7064005 (+)
CI01000012_07136101_07161117 RRBP1A, RRBP1 coding downstream 9745 7136017 ~ 7161548 (+)
CI01000012_07312430_07315865 BTBD6A coding downstream 185400 7311672 ~ 7315917 (+)
CI01000012_07348648_07352865 NA coding downstream 222376 7348648 ~ 7353209 (+)
CI01000012_07359292_07362314 NA coding downstream 232443 7358715 ~ 7362378 (+)
CI01000012_07401962_07405598 NUSAP1 coding downstream 275690 7401962 ~ 7405598 (+)
G72757 NA non-coding upstream 32918 7074666 ~ 7087621 (+)
CI01000012_06826817_06842273 NA non-coding upstream 278115 6825923 ~ 6842529 (+)
CI01000012_06441231_06476986 KIF16BB non-coding upstream 524022 6441192 ~ 6477104 (+)
G72760 NA non-coding upstream 558928 6557200 ~ 6561611 (+)
G72713 NA non-coding upstream 721899 6397486 ~ 6398640 (+)
G73150 NA non-coding downstream 104914 7231186 ~ 7231443 (+)
G73223 NA non-coding downstream 133554 7259826 ~ 7260038 (+)
G73224 NA non-coding downstream 134588 7260860 ~ 7261065 (+)
G73253 NA non-coding downstream 212498 7338770 ~ 7338975 (+)
G73254 NA non-coding downstream 218323 7344595 ~ 7344915 (+)
CI01000012_05923216_05928055 SRD5A2B other upstream 1196234 5922385 ~ 5929186 (+)
G71623 NA other upstream 1303934 5813517 ~ 5816605 (+)
G71548 NA other upstream 1559106 5550493 ~ 5561433 (+)
G71221 NA other upstream 1580083 5538525 ~ 5540456 (+)
G71218 NA other upstream 1582155 5535852 ~ 5538384 (+)
CI01000012_07806089_07811902 BEND3 other downstream 679831 7805248 ~ 7811902 (+)
G73578 NA other downstream 1240534 8366806 ~ 8367627 (+)
CI01000012_10223957_10235955 NA other downstream 3095683 10223697 ~ 10236276 (+)
G75533 NA other downstream 4018545 11144817 ~ 11145739 (+)
G76385 NA other downstream 5504483 12630755 ~ 12675666 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_006760 snx5 coding NC_007124.7 CM002897.2 33645413 ~ 33654931 (-)