XLOC_006763 (zgc:163030)


Basic Information

Item Value
gene id XLOC_006763
gene name zgc:163030
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 33669936 ~ 33671694 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00013020
AATTGATCACGCTTTCGACTTACTGACACAACGAGGAAAGATCAAGACAAATCACTGTTCAAGTATGTTTCTTAAAGCTATTGTGGTGCTTTTTGTGGTGAATTTGACCCTGTCGAGCGCTGGCCTGGTCGGAGGACCAGTGGATGCGAAATTGGACAAAGAATCAAGACAAGCGTTAAAGTTTGCAATGACCCAgtacaacaaacaaaacagagaTGTGTATTTGTGTGATGTCTCTAAAATCATCAAGCTCCAAAAACAaGTTGTTGCTGGCATTAAATACATCTTCACCGTGAACGTGGCCAGAACCACTTGCAGAAAGGGCAGAGAGAAGAAGCTGTGTGCCATTCAAAAGAACCCCTCTCTGGCACGGGTATACACCCTGTCTTATTTACAATGAATAGGTTCTGTACATTTCTCCATTTTCATAAGAGGTATCTTTATTTACTTGTAGGTAAGGCAATGCAGAATGGCGGTCTGGATCAAGTCATGGGAGAATTTTATTAAAGTCACTGAAAATTCCTGCCTGTAGAGGATGCTACTGTTGCAGTTTGAGGCTTTTACAAAGTGCAATATAACTCACTTGATATTGCTTATTATACTGaactttaaatatttactatTGCTTAAAATAGGAATTGTATTTGTGCAGGTAACCTGTTGATGTCAGCTGCAAATCTTTATACATAAAAGCTAATGCAAGCTTGCCAACCTGTTAGACTCCTTTGCTCCAAAAGGACTACAGTTTGAAAGAATTTCTAAATAAGCCTTGTGTTCTCGTCTTTGTTAATCCTTGGCTTATTAAAAGTTGGTCCTTCAATTTTGT
>TCONS_00013021
AATTGATCACGCTTTCGACTTACTGACACAACGAGGAAAGATCAAGACAAATCACTGTTCAAGTATGTTTCTTAAAGCTATTGTGGTGCTTTTTGTGGTGAATTTGACCCTGTCGAGCGCTGGCCTGGTCGGAGGACCAGTGGATGCGAAATTGGACAAAGAATCAAGACAAGCGTTAAAGTTTGCAATGACCCAgtacaacaaacaaaacagagaTGTGTATTTGTGTGATGTCTCTAAAATCATCAAGCTCCAAAAACAaGTTGTTGCTGGCATTAAATACATCTTCACCGTGAACGTGGCCAGAACCACTTGCAGAAAGGGCAGAGAGAAGAAGCTGTGTGCCATTCAAAAGAACCCCTCTCTGGCACGGGTAAGGCAATGCAGAATGGCGGTCTGGATCAAGTCATGGGAGAATTTTATTAAAGTCACTGAAAATTCCTGCCTGTAGAGGATGCTACTGTTGCAGTTTGAGGCTTTTACAAAGTGCAATATAACTCACTTGATATTGCTTATTATACTGaactttaaatatttactatTGCTTAAAATAGGAATTGTATTTGTGCAGGTAACCTGTTGATGTCAGCTGCAAATCTTTATACATAAAAGCTAATGCAAGCTTGCCAACCTGTTAGACTCCTTTGCTCCAAAAGGACTACAGTTTGAAAGAATTTCTAAATAAGCCTTGTGTTCTCGTCTTTGTTAATCCTTGGCTTATTAAAAGTTGGTCCTTCAA

Function

symbol description
zgc:163030 Predicted to enable cysteine-type endopeptidase inhibitor activity. Predicted to be active in extracellular space. Human ortholog(s) of this gene implicated in CST3-related cerebral amyloid angiopathy and age related macular degeneration 11. Orthologous to several human genes including CST3 (cystatin C); CST5 (cystatin D); and CST4 (cystatin S).

GO:

id name namespace
GO:0005615 extracellular space cellular_component
GO:0004869 cysteine-type endopeptidase inhibitor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060810-77 Predicted to enable cysteine-type endopeptidase inhibitor activity. Predicted to be active in extracellular space. Human ortholog(s) of this gene implicated in CST3-related cerebral amyloid angiopathy and age related macular degeneration 11. Orthologous to several human genes including CST3 (cystatin C); CST5 (cystatin D); and CST4 (cystatin S).

Ensembl:

ensembl_id ENSDARG00000069192

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00013020 False 826 mRNA 0.39 2 33669936 33671694
TCONS_00013021 True 739 mRNA 0.40 3 33669942 33671694

Neighbor

gene id symbol gene type direction distance location
XLOC_006762 si:dkey-76k16.5 coding downstream 2014 33665305 ~ 33667922 (-)
XLOC_006761 si:dkey-76k16.6 coding downstream 7413 33658871 ~ 33662523 (-)
XLOC_006760 snx5 coding downstream 15005 33645413 ~ 33654931 (-)
XLOC_006759 rrbp1a coding downstream 30886 33611703 ~ 33639050 (-)
XLOC_006757 NA coding downstream 206292 33452438 ~ 33463644 (-)
XLOC_006764 cst3 coding upstream 3862 33675556 ~ 33683913 (-)
XLOC_006765 mad2l1bp coding upstream 23984 33695678 ~ 33700461 (-)
XLOC_006766 flrt3 coding upstream 140148 33811842 ~ 33822550 (-)
XLOC_006767 kif16bb coding upstream 955856 34627550 ~ 34683370 (-)
XLOC_006768 BX649403.1 coding upstream 966935 34638629 ~ 34638746 (-)
XLOC_006471 BX537274.2 misc downstream 23405031 10264741 ~ 10264905 (-)
XLOC_006338 rn7sk misc downstream 32843711 825904 ~ 826225 (-)
XLOC_006758 NA non-coding downstream 210618 33457523 ~ 33459318 (-)
XLOC_006752 NA non-coding downstream 368766 33261131 ~ 33301170 (-)
XLOC_006741 NA non-coding downstream 673440 32946711 ~ 32996496 (-)
XLOC_006738 CU019663.1 non-coding downstream 862295 32793864 ~ 32807641 (-)
XLOC_006769 BX649403.2 non-coding upstream 972456 34644150 ~ 34644281 (-)
XLOC_006773 CR932983.2 non-coding upstream 1511300 35182994 ~ 35194759 (-)
XLOC_006774 NA non-coding upstream 1533603 35205297 ~ 35289437 (-)
XLOC_006775 CU138575.1 non-coding upstream 1698875 35370569 ~ 35370684 (-)

Expression


Co-expression Network