RNA id: CI01000004_04924543_04956339.mRNA


Basic Information

Item Value
RNA id CI01000004_04924543_04956339.mRNA
length 2279
RNA type mRNA
GC content 0.46
exon number 23
gene id CI01000004_04924543_04956339
representative True

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 4924508 ~ 4956435 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTATATATTCTAAGTGGACTAACCACTGACACACAATGTTTATCTCTAACTTGCAATATAAAAACACACTTTTGTCTTTCCAGGTCATCGACACTCTATCAAAACTCTCTTATACACCTACTGCACAACAGACAGGGATCAGGTCATTCCCCACAGAGGAAAGCAGTGAAAATGAAGACATATACATTCATTTGGCAGATCTCATAGATGAGGAGCTGGAAGAAGATATTTATGACCCCGTATACGGAGATGTTGAGGGAGGAGAGGTGTATGAGGATCTGATGAGGACTGAGGCTGCTTCGTCTCAGGCGAAACAGGCCGAGGTGGACATCAGAAGCTGCTGTCTTTTAGAGATCAAACAGACAGAAGCCAAATACACTGAGACTCTGGAGACCATTGAGAAGTATTTTATGATTCCACTGATAAAATTCATCTCAGCAATAGAAATTGACAAGGTTTTCATCAATATACCAGACCTGGTTAAAGTTCACAAAAGCCTAATGGCCGAGATTCAAGACTCTGTTCAAAATAAAAATGCAGAAAATCTCCACCAGATCTTCATTACTTACAAAGACAAGCTTTTGCTTTATGGAAAATACTGCAGTCATGTAGAATCAGCCATTTCTCTGTTAGACTTCATCTGTAAGGAAAAAGAGGGCGTTCGACTGAAACTAGAGGAATGTTCAAAGAGAGCCAACAATGGGAAATTCACTTTGAGAGACTTGCTTGTGGTTCCCATGCAGCGTGTGCTGAAATACCCACTACTGCTTCAGGAATTAGTCAAATATACTAATGACACCACTGAAAAGAGCAACCTACGAGTAGCCCTTGATGCCATGAGAGACTTAGCCCAGTATGTAAATGAGGTGAAAAGAGATGTTGAGACTCTGAGGGAGATTGATCAGTATCAGAGATCCATTGAGAATTTGAATCAGTGCTTACTTTCATACGGAAGACCGAAGGGTGACGGTGAAGTCCGTTTGGTGTCAAATGTGGACAAGCGTAGACAGGACAGACATATTTTTTTGTTCGACGTCGCTGTCATCGTCTGCAAGAGGCGTGGGGACAACTATGAGATGAAGGAAGTGATCGACCTCAATCATTTCAAGATCACCAATAACCCCACCACTGATAAGGACAGCAGAAAGTGGTGCTACGGGTTCTTCCTCACCCACCAGCAGGGGCAGAGTGGATTTGAGTTCCTGTTCAAAACAAAAGAGCTGAAGAAAAAATGGCTGGACCAGTTTGAGATGGCCATATCTAATATTCGCCCAGAGAATGCCACGTTTAACTCTCACCACTTCAAAATGCACACTTTTGAGAGGGCCACCACCTGCAGCTCCTGTCATATGCTTCTCAGGGGAATTTTTAACCAAGGCTACCTTTGTACTAAATGTGGAAACGGGGCTCATAAGGGCTGTCTGGGAAAACTAGGAGTCTGTGGAAGGGCAGGTGCTGCTGTTCAGAAAGCACAGAGAAAGACAACACCTAGGAAACAAGAAGACCCAGGTTTGCCAAAAATGTTGGTCATCAGAGATTATTTTGGGGTCCCCAGTCCTCAGGTCGGACCGCCGCTGAATGCTCAGATTGGTGAAGTCATAGAGGTCATCTGTGCCGATCCTCACAGCTCCTGGTGGCAGGTACCCAGGACAATTGACTATTCAGCCCAACCCTGGTTCGCCGGGCCCATAGAGAGGCACCACGCGGAGTCCGAGCTCATGGAGAGAGCGAACAGCACCTACCTGGTGCGATACAGGAGCCGGGAGAACAGAGAGTATGCCATCAGCATCAAGTACAACAACGATGTGAAGCACATTAAGATCCTCACTAAGGAGGGCTGCTTCTACATTGCTGAAAGCAGGACATTCAAGACTGTATTAGAACTGGTTGAATATTACAAACAGCACTCTTTGAAAGAGGGTTTCCGTACACTGGACACAACTCTGCAGATGCCATATAAGGAGCTCAGTAGTGGACTCAGAACTGTTGCTCTCATTGCCCAAGATGGCTTCTCAAAGAGACAGACCGATGCTGTGAAGCGAGCCGTACCCACTCGGCACCTGGCAGCAGGAAAAAGGCTGTTTGTGTCTGCTGCAGGCGACGTGGCGAGAGAGAGGACTCGGCTAAACAAGACGCCGGCGTTGCACTCAAGTAGCACAGGCAATCTCCCTGACACGACATGACAGTTTGGTTTGAGTTACAGGAAAAAGCCATGATGGATGCTAAGCTTCCTCTCACCTGTAGGGACTTGGCTGTTTTTCTTTCTTGTAGCTGAGAGA

Function

GO:      GO:0005089, GO:0007264, GO:0005085, GO:0035023, GO:0035556, GO:0046872

KEGG:

id description
K05730 VAV; guanine nucleotide exchange factor VAV

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU30824 lncRNA upstream 23671 4895552 ~ 4900837 (+) True G27295
TU30836 lncRNA upstream 168281 4755730 ~ 4756227 (+) True G27305
TU30783 lncRNA upstream 200878 4723420 ~ 4723630 (+) True G27278
TU30776 lncRNA upstream 228591 4694973 ~ 4695917 (+) True G27271
TU30770 lncRNA upstream 237586 4686708 ~ 4686922 (+) True G27265
TU30645 lncRNA downstream 34968 4991403 ~ 5116579 (+) False G27148
TU30646 lncRNA downstream 34968 4991403 ~ 5116579 (+) False G27148
TU30643 lncRNA downstream 83353 5039788 ~ 5116579 (+) False G27148
TU30647 lncRNA downstream 111267 5067702 ~ 5116579 (+) False G27148
TU30921 lncRNA downstream 151827 5108262 ~ 5126498 (+) True G27383
CI01000004_04798717_04889650.mRNA mRNA upstream 34858 4798717 ~ 4889650 (+) True CI01000004_04798717_04889650
CI01000004_04786239_04788953.mRNA mRNA upstream 135547 4786239 ~ 4788961 (+) True CI01000004_04786239_04788953
CI01000004_04754556_04784656.mRNA mRNA upstream 139751 4754556 ~ 4784757 (+) True CI01000004_04754556_04784656
CI01000004_04690908_04706755.mRNA mRNA upstream 217608 4690908 ~ 4706900 (+) True CI01000004_04690908_04706755
CI01000004_04535801_04536013.mRNA mRNA upstream 387999 4535258 ~ 4536509 (+) True CI01000004_04535801_04536013
CI01000004_05154049_05203177.mRNA mRNA downstream 197614 5154049 ~ 5203177 (+) True CI01000004_05154049_05203177
CI01000004_05227614_05231253.mRNA mRNA downstream 271179 5227614 ~ 5232052 (+) True CI01000004_05227614_05231253
CI01000004_05238552_05246750.mRNA mRNA downstream 280769 5237204 ~ 5247114 (+) True CI01000004_05238552_05246750
CI01000004_05343381_05353920.mRNA mRNA downstream 386946 5343381 ~ 5354231 (+) True CI01000004_05343381_05353920
CI01000004_05389431_05393230.mRNA mRNA downstream 432935 5389370 ~ 5394211 (+) True CI01000004_05389431_05393230
TU29692 other upstream 1372062 3551048 ~ 3552446 (+) True CI01000004_03550525_03552621
TU29632 other upstream 1402115 3509017 ~ 3522393 (+) True G26245
TU29335 other upstream 2165570 2758456 ~ 2758938 (+) True CI01000004_02745885_02768971
TU29329 other upstream 2187740 2736536 ~ 2736768 (+) True G25992
TU29214 other upstream 2351459 2548075 ~ 2573049 (+) True G25882
TU31414 other downstream 416390 5372825 ~ 5373803 (+) False G27805
TU31416 other downstream 416390 5372825 ~ 5373803 (+) False G27805
TU31417 other downstream 416390 5372825 ~ 5373803 (+) False G27805
TU31418 other downstream 416390 5372825 ~ 5373803 (+) True G27805
TU31830 other downstream 776154 5732589 ~ 5733001 (+) True G28165

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00032047 False 3388 mRNA 0.47 27 NC_007113.7 15993389 ~ 16159491 (-)