RNA id: CI01000004_05154049_05203177.mRNA


Basic Information

Item Value
RNA id CI01000004_05154049_05203177.mRNA
length 2697
RNA type mRNA
GC content 0.56
exon number 37
gene id CI01000004_05154049_05203177
representative True

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 5154049 ~ 5203177 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGGCACCGCGTGGCTATTAGCATCGAAAAGAAGACCGTCACAATGATTGTGGACTGTAAGAAGAAGATCTCTAAACCACTCAGCAGAAGTGACCACGCAATCATTAACACAGATGGCATCTCTGTCTTCGGCACCAGAATCCTGGACGAGGAAGTTTTTGAGGCAAGCAAAGCTGGGGACATCCAGCAGCTTCTTTTGGTGGCAGACCCTCGTGCAGCCTACGACTACTGTGAACACTACAGCCCTGACTGTGAAACCCCCCACCAGGACACACCACAGGCCCAGGAACCTGAGGAGGAGTATACTGAATACACAGATTATAATGAGTTCTATGACTACACAGAGGAAGTGACTGCCACTGAAAATCCCACTGACAACGTCTATACTGAGACCAAGCCCAGCACTGCTGAAACGGGCGACTATTATGTTGAGCAGGACTATGCCACTGAAGCCCCTTCCATTTCCATTCCAGCCAAAGAGAATCCTTTGCCAAAAGAGGAAATAGTAGACGACTACGTTACAGGGATAGAAGAAGTTGGAGTGGATCCCACCATTGCCACCAACGAGAATGTGGAAATTGTGGAGTCCAAAAACACTAATGCCGCCGAAACCCAGGACTTTAAAGAATACGACATTAACGAATATGATGGAAAAGAGTTAGATCCCAGCAATTATGACGATACATTCTATGAATACAATACTAATACTAATGGAGGCAATCCCACTGGATCAACCTATGAGGAGGAGTTCGGACCAGGCCGGCCTGCTGAAACGGAGGTCACAGAGAGTAATGTTGGTGGTGGCTATGGTGGTGAGAAGGGGCAAAAAGGTGAACCTGCAGTCATTGAGCCGGGGATGCTTGTAGAGGGACCTCCAGGACCACCAGGGCCCGCCGGCCTCCCTGGCACTCCAGGCATACAAGGCTCTCCGGGCCTCCACGGAGATCCTGGTGAAAGAGGTCCTCCTGGTCGTCCGGGTTTGCCAGGCGCAGATGGAGCTCCGGGGCCCTCTGGCACTATCCTCATGTTGCCTTTCCGCGCTGGTGGAGAATCTTCAAAAGGTCCAGTGGTGACGGCACAAGAAGCTCAGGCCCAAGCCATCCTTGCCCAGGCCCGGGTGTGTGTGAGACATAAAACTCATCTGTGTATGTGTGTGTTTCAGGGTGGTCCTGGTGCACCTGGTGCTAAAGGGGAAAGTGGAGATTCTGGCCCACAGGGACCAAGAGGACTTCAAGGCCCTACTGGATCACCTGGAAAACCAGGCAAGAGGGGCCGAAATGGAGCCGACGGAGCCAGAGGAATTCCTGGAGAATCAGGAGCCAAGGGGGACCGAGGATTTGATGGGCTTCCTGGCTTACCTGGTGAGAAGGGACACAGAGGTGAGACAGGTCCCATCGGCCTACCAGGCCCTCCAGGAGAGGATGGACCAAGGGGTGAGGATGGTGAGATCGGACAGAGGGGAATGCCAGGAGAAAGTGGTCCAAGAGGACTGCTGGGCCCCAGAGGATCTCCTGGTACCGCTGGACAGCGTGGTCTTCCTGGATTGGATGGACCACCTGGCCCTAAAGGAAATATGGGTCCTCAAGGAGAGCCTGGACCCCCTGGGCAACAGGGTAACACTGGTCCACATGGTCTGCCTGGTCCTCAAGGCCCGATTGGTCCACCTGGAGAGAAAGGTCCTGGTGGAAAACAGGGGCTCCATGGGCTGGCTGGGGCTGATGGGCCTCCTGGTCATCCTGGGAAAGAGGGTCCTCCCGGGGAGAAAGGAGCAGCTGGCCACCCAGGTCCCCAGGGTTCCATTGGTTATCCCGGCCCCCGAGGTGTGAAGGGTGCCGAGGGTGTTCGTGGCTTGAAGGGCGGCAAAGGCGAGAAGGGAGAAGATGGTTTTCCTGGGTTCAAGGGCGACATGGGCCTCAAGGGTGACAAGGGAGAGGGTGGTGTTTTGGGCCCCAGAGGAGAAGACGGACCAGAGGGGCCCAAAGGTAAATCAGGTCCCACCGGAGAGGCTGGTCCTATGGGCACGGCAGGAGAGAAGGGAAAACTTGGTGTTCCAGGTTTGCCTGGATACCCGGGAAGACAAGGTCCTAAGGGCTCTACTGGTTTCCCTGGCTTCCCTGGATCCAATGGTGAGAAGGGAGGAAGGGGTATCGCTGGTAAAGCGGGTCCAAGAGGACAAAGAGGTCCAACGGGACCCCGTGGTGGAAGAGGTGCCAGAGGTCCAACAGGAAAACCTGGACCAAAGGGAACATCAGGAAATGATGGACCATCTGGTGGCCCAGGAGAGAGAGGACCCCAAGGACCTCAGGGCCCTGTTGGATTACCAGGCCCTAAAGGCCCACCTGGGCCTGCTGGAAAGGACGGATTGCCTGGTCACCCTGGACAGCGAGGAGAGACTGGTTTTCAAGGAAAGACTGGACCTCCAGGACCTGGAGGTGTTGTTGGCCCACAGGGCTCTACTGGAGAAACTGGTCCTGTTGGAGAGAGAGGACATCCTGGATCTCCAGGGCCCCCTGGAGAGCAAGGTCTTCCCGGAGCTGCTGGCAAAGAAGGTGGAAAGGGTGATCCAGGTCCTCAGGGGATTTCTGGGAAACCTGGCCCTGCCGGATTGAAAGGGTTCCCAGGACAAAGGGGGCTTCCTGGCGCAGCGGGTCCATCTGGTCTGAAGGGAGGCGAGGGTCCACAGGGCCCACCTGGCCCC

Function

GO:

id name namespace
GO:0005201 extracellular matrix structural constituent molecular_function

KEGG:

id description
K19721 COL5AS; collagen type V/XI/XXIV/XXVII, alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU30926 lncRNA upstream 20472 5133205 ~ 5133577 (+) True G27388
TU30921 lncRNA upstream 27551 5108262 ~ 5126498 (+) True G27383
TU30645 lncRNA upstream 37470 4991403 ~ 5116579 (+) False G27148
TU30646 lncRNA upstream 37470 4991403 ~ 5116579 (+) False G27148
TU30643 lncRNA upstream 37470 5039788 ~ 5116579 (+) False G27148
TU31351 lncRNA downstream 3671 5206848 ~ 5208660 (+) True G27753
TU31357 lncRNA downstream 16438 5219615 ~ 5220010 (+) True G27757
TU31380 lncRNA downstream 45657 5248834 ~ 5249065 (+) True G27780
TU31382 lncRNA downstream 50492 5253669 ~ 5254045 (+) True G27782
TU31391 lncRNA downstream 61647 5264824 ~ 5265316 (+) True G27791
CI01000004_04924543_04956339.mRNA mRNA upstream 197614 4924508 ~ 4956435 (+) True CI01000004_04924543_04956339
CI01000004_04798717_04889650.mRNA mRNA upstream 264399 4798717 ~ 4889650 (+) True CI01000004_04798717_04889650
CI01000004_04786239_04788953.mRNA mRNA upstream 365088 4786239 ~ 4788961 (+) True CI01000004_04786239_04788953
CI01000004_04754556_04784656.mRNA mRNA upstream 369292 4754556 ~ 4784757 (+) True CI01000004_04754556_04784656
CI01000004_04690908_04706755.mRNA mRNA upstream 447149 4690908 ~ 4706900 (+) True CI01000004_04690908_04706755
CI01000004_05227614_05231253.mRNA mRNA downstream 24437 5227614 ~ 5232052 (+) True CI01000004_05227614_05231253
CI01000004_05238552_05246750.mRNA mRNA downstream 34027 5237204 ~ 5247114 (+) True CI01000004_05238552_05246750
CI01000004_05343381_05353920.mRNA mRNA downstream 140204 5343381 ~ 5354231 (+) True CI01000004_05343381_05353920
CI01000004_05389431_05393230.mRNA mRNA downstream 186193 5389370 ~ 5394211 (+) True CI01000004_05389431_05393230
CI01000004_05397192_05402109.mRNA mRNA downstream 193918 5397095 ~ 5402109 (+) True CI01000004_05397192_05402109
TU29692 other upstream 1601603 3551048 ~ 3552446 (+) True CI01000004_03550525_03552621
TU29632 other upstream 1631656 3509017 ~ 3522393 (+) True G26245
TU29335 other upstream 2395111 2758456 ~ 2758938 (+) True CI01000004_02745885_02768971
TU29329 other upstream 2417281 2736536 ~ 2736768 (+) True G25992
TU29214 other upstream 2581000 2548075 ~ 2573049 (+) True G25882
TU31414 other downstream 169648 5372825 ~ 5373803 (+) False G27805
TU31416 other downstream 169648 5372825 ~ 5373803 (+) False G27805
TU31417 other downstream 169648 5372825 ~ 5373803 (+) False G27805
TU31418 other downstream 169648 5372825 ~ 5373803 (+) True G27805
TU31830 other downstream 529412 5732589 ~ 5733001 (+) True G28165

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00032046 True 8491 mRNA 0.49 67 NC_007113.7 15389193 ~ 15563194 (-)