RNA id: TU29397


Basic Information

Item Value
RNA id TU29397
length 207
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G26041
representative True

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 2829063 ~ 2829269 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAGCTCTGCCCATCTTTACTTCTGAGAGACTCTGCCTCTCTAAGACATCCCTTTTATAGCTAATCATGTTACAGACCTGATATCAATTAACTTAATTAGTTGCTAGATGTTCTCCCAGCTGAATCTTTTCAAAATTTCTTGCTTTTTCAGCCATTTGTTGCCCCTGTGCCAACTTTTTTGAGACCTGTAGCAGGCATCAAATTTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU29320 lncRNA upstream 18736 2804151 ~ 2810327 (+) True G25983
TU29323 lncRNA upstream 49881 2777754 ~ 2779182 (+) True G25986
TU29318 lncRNA upstream 51808 2776369 ~ 2777255 (+) True G25982
TU29370 lncRNA upstream 53082 2775570 ~ 2775981 (+) True G26017
TU29369 lncRNA upstream 53217 2775570 ~ 2775846 (+) False G26017
TU29398 lncRNA downstream 2380 2831649 ~ 2832043 (+) True G26042
TU29403 lncRNA downstream 23529 2852798 ~ 2858925 (+) False G26046
TU29402 lncRNA downstream 28867 2858136 ~ 2858925 (+) True G26046
TU29405 lncRNA downstream 31162 2860431 ~ 2862594 (+) True G26048
TU29444 lncRNA downstream 92448 2921717 ~ 2921971 (+) True G26086
CI01000004_02745885_02768971.mRNA mRNA upstream 59928 2745885 ~ 2769135 (+) False CI01000004_02745885_02768971
CI01000004_02671199_02727898.mRNA mRNA upstream 100735 2671199 ~ 2728328 (+) True CI01000004_02671199_02727898
CI01000004_02528689_02568243.mRNA mRNA upstream 259836 2528689 ~ 2569227 (+) True CI01000004_02528689_02568243
CI01000004_02143355_02186281.mRNA mRNA upstream 642292 2142676 ~ 2186771 (+) True CI01000004_02143355_02186281
CI01000004_02126757_02136937.mRNA mRNA upstream 691715 2126466 ~ 2137348 (+) True CI01000004_02126757_02136937
CI01000004_02865415_02867952.mRNA mRNA downstream 35584 2864853 ~ 2868369 (+) True CI01000004_02865415_02867952
CI01000004_02903759_02904287.mRNA mRNA downstream 74490 2903759 ~ 2904324 (+) True CI01000004_02903759_02904287
CI01000004_02906581_02908320.mRNA mRNA downstream 77210 2906479 ~ 2908320 (+) True CI01000004_02906581_02908320
CI01000004_02948465_02951235.mRNA mRNA downstream 117947 2947216 ~ 2951743 (+) True CI01000004_02948465_02951235
CI01000004_02955707_02959931.mRNA mRNA downstream 126261 2955530 ~ 2959931 (+) True CI01000004_02955707_02959931
TU29335 other upstream 70125 2758456 ~ 2758938 (+) True CI01000004_02745885_02768971
TU29329 other upstream 92295 2736536 ~ 2736768 (+) True G25992
TU29214 other upstream 256014 2548075 ~ 2573049 (+) True G25882
TU28564 other upstream 743356 2083057 ~ 2085707 (+) True G25329
TU28515 other upstream 955705 1864159 ~ 1873358 (+) True G25282
TU29632 other downstream 679748 3509017 ~ 3522393 (+) True G26245
TU29692 other downstream 721779 3551048 ~ 3552446 (+) True CI01000004_03550525_03552621
TU31414 other downstream 2543556 5372825 ~ 5373803 (+) False G27805
TU31416 other downstream 2543556 5372825 ~ 5373803 (+) False G27805
TU31417 other downstream 2543556 5372825 ~ 5373803 (+) False G27805

Expression Profile