RNA id: TU31391


Basic Information

Item Value
RNA id TU31391
length 256
lncRNA type antisense_over
GC content 0.49
exon number 2
gene id G27791
representative True

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 5264824 ~ 5265316 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTGTGGTCCGTACATCCATGGAGTGAGGGTCAGACTAGGATACTCTCCAAATGGTGGGACAATCATAGTGAAGACCAAAGAAATAAGGACAAAACTGGCTGGCAAAACAATCTGTGCAAGGAAATCTTTGTGGCTGCGTGTGGCATGGTGAAATCTCTTGACCAGAAGAGCGTGGAACTGTTTGAGTACCAGGCTAATGCCTTTAACTTGCTTGGAGGCTCTACCAGCACTGTTGTCAGACTCCAGTGGGCTCCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU31382 lncRNA upstream 10779 5253669 ~ 5254045 (+) True G27782
TU31380 lncRNA upstream 15759 5248834 ~ 5249065 (+) True G27780
TU31357 lncRNA upstream 44814 5219615 ~ 5220010 (+) True G27757
TU31351 lncRNA upstream 56164 5206848 ~ 5208660 (+) True G27753
TU30926 lncRNA upstream 131247 5133205 ~ 5133577 (+) True G27388
TU31394 lncRNA downstream 10796 5276112 ~ 5276352 (+) True G27794
TU31403 lncRNA downstream 89835 5355151 ~ 5357856 (+) False G27801
TU31404 lncRNA downstream 89835 5355151 ~ 5357856 (+) True G27801
TU31457 lncRNA downstream 104381 5369697 ~ 5369945 (+) True G27836
TU31557 lncRNA downstream 176048 5441364 ~ 5441713 (+) True G27921
CI01000004_05238552_05246750.mRNA mRNA upstream 17710 5237204 ~ 5247114 (+) True CI01000004_05238552_05246750
CI01000004_05227614_05231253.mRNA mRNA upstream 32772 5227614 ~ 5232052 (+) True CI01000004_05227614_05231253
CI01000004_05154049_05203177.mRNA mRNA upstream 61647 5154049 ~ 5203177 (+) True CI01000004_05154049_05203177
CI01000004_04924543_04956339.mRNA mRNA upstream 308389 4924508 ~ 4956435 (+) True CI01000004_04924543_04956339
CI01000004_04798717_04889650.mRNA mRNA upstream 375174 4798717 ~ 4889650 (+) True CI01000004_04798717_04889650
CI01000004_05343381_05353920.mRNA mRNA downstream 78065 5343381 ~ 5354231 (+) True CI01000004_05343381_05353920
CI01000004_05389431_05393230.mRNA mRNA downstream 124054 5389370 ~ 5394211 (+) True CI01000004_05389431_05393230
CI01000004_05397192_05402109.mRNA mRNA downstream 131779 5397095 ~ 5402109 (+) True CI01000004_05397192_05402109
CI01000004_05454350_05455993.mRNA mRNA downstream 188525 5453841 ~ 5455993 (+) True CI01000004_05454350_05455993
CI01000004_05459139_05467673.mRNA mRNA downstream 193823 5459139 ~ 5468857 (+) True CI01000004_05459139_05467673
TU29692 other upstream 1712378 3551048 ~ 3552446 (+) True CI01000004_03550525_03552621
TU29632 other upstream 1742431 3509017 ~ 3522393 (+) True G26245
TU29335 other upstream 2505886 2758456 ~ 2758938 (+) True CI01000004_02745885_02768971
TU29329 other upstream 2528056 2736536 ~ 2736768 (+) True G25992
TU29214 other upstream 2691775 2548075 ~ 2573049 (+) True G25882
TU31414 other downstream 107509 5372825 ~ 5373803 (+) False G27805
TU31416 other downstream 107509 5372825 ~ 5373803 (+) False G27805
TU31417 other downstream 107509 5372825 ~ 5373803 (+) False G27805
TU31418 other downstream 107509 5372825 ~ 5373803 (+) True G27805
TU31830 other downstream 467273 5732589 ~ 5733001 (+) True G28165

Expression Profile