RNA id: TU31591


Basic Information

Item Value
RNA id TU31591
length 224
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G27943
representative True

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 5479140 ~ 5479363 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGGTGATCTTGGTCCATTGGGTCTGATAATAAGATGTTGTGGGGTTACTGATGTGAACCCTAGTGCAGTCTTTTCAGAGCAGTATTAGCTTTCTAATGTAACGTTCATAGCATGGTACCCTCTACTGGTTAGCTCATGAAATTTCTACTTGAATTGCAAGGCCTATAGGACAGCGTGGTTAAGAGTTTTAAAAACCAAGATTACTGGAATATTAAGGTCTTTAT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU31557 lncRNA upstream 37427 5441364 ~ 5441713 (+) True G27921
TU31457 lncRNA upstream 109195 5369697 ~ 5369945 (+) True G27836
TU31403 lncRNA upstream 121284 5355151 ~ 5357856 (+) False G27801
TU31404 lncRNA upstream 121284 5355151 ~ 5357856 (+) True G27801
TU31394 lncRNA upstream 202788 5276112 ~ 5276352 (+) True G27794
TU31592 lncRNA downstream 172 5479535 ~ 5479749 (+) True G27944
TU31570 lncRNA downstream 2442 5481805 ~ 5581710 (+) True G27924
TU31672 lncRNA downstream 160368 5639731 ~ 5639932 (+) True G28018
TU31674 lncRNA downstream 162477 5641840 ~ 5642113 (+) True G28020
TU31677 lncRNA downstream 165814 5645177 ~ 5645415 (+) True G28023
CI01000004_05474127_05476501.mRNA mRNA upstream 2385 5473079 ~ 5476755 (+) True CI01000004_05474127_05476501
CI01000004_05459139_05467673.mRNA mRNA upstream 10283 5459139 ~ 5468857 (+) True CI01000004_05459139_05467673
CI01000004_05454350_05455993.mRNA mRNA upstream 23147 5453841 ~ 5455993 (+) True CI01000004_05454350_05455993
CI01000004_05397192_05402109.mRNA mRNA upstream 77031 5397095 ~ 5402109 (+) True CI01000004_05397192_05402109
CI01000004_05389431_05393230.mRNA mRNA upstream 84929 5389370 ~ 5394211 (+) True CI01000004_05389431_05393230
CI01000004_05735852_05752650.mRNA mRNA downstream 256435 5735798 ~ 5754011 (+) True CI01000004_05735852_05752650
CI01000004_05781905_05788633.mRNA mRNA downstream 302239 5781602 ~ 5790006 (+) True CI01000004_05781905_05788633
CI01000004_05800602_05802011.mRNA mRNA downstream 321239 5800602 ~ 5802087 (+) True CI01000004_05800602_05802011
CI01000004_05812640_05834517.mRNA mRNA downstream 333277 5812640 ~ 5834517 (+) True CI01000004_05812640_05834517
CI01000004_05837208_05841141.mRNA mRNA downstream 357845 5837208 ~ 5841141 (+) True CI01000004_05837208_05841141
TU31414 other upstream 105337 5372825 ~ 5373803 (+) False G27805
TU31416 other upstream 105337 5372825 ~ 5373803 (+) False G27805
TU31417 other upstream 105337 5372825 ~ 5373803 (+) False G27805
TU31418 other upstream 105337 5372825 ~ 5373803 (+) True G27805
TU29692 other upstream 1926694 3551048 ~ 3552446 (+) True CI01000004_03550525_03552621
TU31830 other downstream 253226 5732589 ~ 5733001 (+) True G28165
TU32005 other downstream 990665 6470028 ~ 6502087 (+) True G28302
TU32079 other downstream 1091857 6572819 ~ 6574421 (+) True G28354
TU32454 other downstream 2175409 7654772 ~ 7654879 (+) True G28706
TU32590 other downstream 2954342 8439958 ~ 8451227 (+) True G28818

Expression Profile