Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU31570 |
| length | 753 |
| lncRNA type | read_through |
| GC content | 0.36 |
| exon number | 2 |
| gene id | G27924 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000004 |
| NCBI id | null |
| chromosome length | 17451736 |
| location | 5481805 ~ 5581710 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU31592 | lncRNA | upstream | 2056 | 5479535 ~ 5479749 (+) | True | G27944 |
| TU31591 | lncRNA | upstream | 2442 | 5479140 ~ 5479363 (+) | True | G27943 |
| TU31557 | lncRNA | upstream | 40092 | 5441364 ~ 5441713 (+) | True | G27921 |
| TU31457 | lncRNA | upstream | 111860 | 5369697 ~ 5369945 (+) | True | G27836 |
| TU31403 | lncRNA | upstream | 123949 | 5355151 ~ 5357856 (+) | False | G27801 |
| TU31672 | lncRNA | downstream | 58021 | 5639731 ~ 5639932 (+) | True | G28018 |
| TU31674 | lncRNA | downstream | 60130 | 5641840 ~ 5642113 (+) | True | G28020 |
| TU31677 | lncRNA | downstream | 63467 | 5645177 ~ 5645415 (+) | True | G28023 |
| TU31793 | lncRNA | downstream | 135402 | 5717112 ~ 5722122 (+) | True | G28136 |
| TU31843 | lncRNA | downstream | 264766 | 5846476 ~ 5846828 (+) | True | G28178 |
| CI01000004_05474127_05476501.mRNA | mRNA | upstream | 5050 | 5473079 ~ 5476755 (+) | True | CI01000004_05474127_05476501 |
| CI01000004_05459139_05467673.mRNA | mRNA | upstream | 12948 | 5459139 ~ 5468857 (+) | True | CI01000004_05459139_05467673 |
| CI01000004_05454350_05455993.mRNA | mRNA | upstream | 25812 | 5453841 ~ 5455993 (+) | True | CI01000004_05454350_05455993 |
| CI01000004_05397192_05402109.mRNA | mRNA | upstream | 79696 | 5397095 ~ 5402109 (+) | True | CI01000004_05397192_05402109 |
| CI01000004_05389431_05393230.mRNA | mRNA | upstream | 87594 | 5389370 ~ 5394211 (+) | True | CI01000004_05389431_05393230 |
| CI01000004_05735852_05752650.mRNA | mRNA | downstream | 154088 | 5735798 ~ 5754011 (+) | True | CI01000004_05735852_05752650 |
| CI01000004_05781905_05788633.mRNA | mRNA | downstream | 199892 | 5781602 ~ 5790006 (+) | True | CI01000004_05781905_05788633 |
| CI01000004_05800602_05802011.mRNA | mRNA | downstream | 218892 | 5800602 ~ 5802087 (+) | True | CI01000004_05800602_05802011 |
| CI01000004_05812640_05834517.mRNA | mRNA | downstream | 230930 | 5812640 ~ 5834517 (+) | True | CI01000004_05812640_05834517 |
| CI01000004_05837208_05841141.mRNA | mRNA | downstream | 255498 | 5837208 ~ 5841141 (+) | True | CI01000004_05837208_05841141 |
| TU31414 | other | upstream | 108002 | 5372825 ~ 5373803 (+) | False | G27805 |
| TU31416 | other | upstream | 108002 | 5372825 ~ 5373803 (+) | False | G27805 |
| TU31417 | other | upstream | 108002 | 5372825 ~ 5373803 (+) | False | G27805 |
| TU31418 | other | upstream | 108002 | 5372825 ~ 5373803 (+) | True | G27805 |
| TU29692 | other | upstream | 1929359 | 3551048 ~ 3552446 (+) | True | CI01000004_03550525_03552621 |
| TU31830 | other | downstream | 150879 | 5732589 ~ 5733001 (+) | True | G28165 |
| TU32005 | other | downstream | 888318 | 6470028 ~ 6502087 (+) | True | G28302 |
| TU32079 | other | downstream | 989510 | 6572819 ~ 6574421 (+) | True | G28354 |
| TU32454 | other | downstream | 2073062 | 7654772 ~ 7654879 (+) | True | G28706 |
| TU32590 | other | downstream | 2851995 | 8439958 ~ 8451227 (+) | True | G28818 |
