Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00000114 |
| length | 2297 |
| RNA type | mRNA |
| GC content | 0.47 |
| exon number | 2 |
| gene id | XLOC_000058 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007112.7 |
| NCBI id | CM002885.2 |
| chromosome length | 59578282 |
| location | 5273481 ~ 5277583 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0042127 | regulation of cell population proliferation | biological_process |
| GO:0048513 | animal organ development | biological_process |
| GO:0046580 | negative regulation of Ras protein signal transduction | biological_process |
| GO:0007275 | multicellular organism development | biological_process |
| GO:0001525 | angiogenesis | biological_process |
| GO:0043407 | negative regulation of MAP kinase activity | biological_process |
| GO:0045595 | regulation of cell differentiation | biological_process |
| GO:0070373 | negative regulation of ERK1 and ERK2 cascade | biological_process |
| GO:0009953 | dorsal/ventral pattern formation | biological_process |
| GO:0009966 | regulation of signal transduction | biological_process |
| GO:0040037 | negative regulation of fibroblast growth factor receptor signaling pathway | biological_process |
| GO:0060841 | venous blood vessel development | biological_process |
| GO:0005829 | cytosol | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0003674 | molecular_function | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-030131-7038 | Acts upstream of or within blood vessel development; dorsal/ventral pattern formation; and negative regulation of fibroblast growth factor receptor signaling pathway. Predicted to be located in cytoplasm and membrane. Predicted to be active in cytosol. Is expressed in several structures, including brain; forerunner cell group; hindbrain neural keel; midbrain hindbrain boundary neural keel; and sensory system. Human ortholog(s) of this gene implicated in IgA glomerulonephritis. Orthologous to human SPRY2 (sprouty RTK signaling antagonist 2). |
| ensembl_id | ENSDART00000052423 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00002809 | lncRNA | upstream | 243326 | 4901460 ~ 5030155 (+) | True | XLOC_000057 |
| TCONS_00000113 | lncRNA | upstream | 593004 | 4598060 ~ 4680477 (+) | True | XLOC_000056 |
| TCONS_00003016 | lncRNA | upstream | 1552878 | 3718666 ~ 3720603 (+) | True | XLOC_000053 |
| TCONS_00000101 | lncRNA | upstream | 2973935 | 2296591 ~ 2299546 (+) | True | XLOC_000048 |
| TCONS_00002808 | lncRNA | upstream | 3249836 | 2023409 ~ 2023645 (+) | True | XLOC_000044 |
| TCONS_00003018 | lncRNA | downstream | 33896 | 5311479 ~ 5313595 (+) | False | XLOC_000059 |
| TCONS_00003017 | lncRNA | downstream | 33896 | 5311479 ~ 5313595 (+) | True | XLOC_000059 |
| TCONS_00003019 | lncRNA | downstream | 429387 | 5706970 ~ 5728684 (+) | True | XLOC_000064 |
| TCONS_00003020 | lncRNA | downstream | 517430 | 5795013 ~ 5799092 (+) | False | XLOC_000065 |
| TCONS_00003021 | lncRNA | downstream | 517452 | 5795035 ~ 5799092 (+) | True | XLOC_000065 |
| TCONS_00000112 | mRNA | upstream | 1119149 | 4101741 ~ 4154332 (+) | True | XLOC_000055 |
| TCONS_00000110 | mRNA | upstream | 2237462 | 2712956 ~ 3036019 (+) | True | XLOC_000052 |
| TCONS_00000106 | mRNA | upstream | 2829271 | 2301974 ~ 2444210 (+) | False | XLOC_000050 |
| TCONS_00000109 | mRNA | upstream | 2829709 | 2431956 ~ 2443772 (+) | True | XLOC_000050 |
| TCONS_00000105 | mRNA | upstream | 2864355 | 2301974 ~ 2409126 (+) | False | XLOC_000050 |
| TCONS_00000116 | mRNA | downstream | 124893 | 5402476 ~ 5419116 (+) | False | XLOC_000060 |
| TCONS_00000118 | mRNA | downstream | 144856 | 5422439 ~ 5434261 (+) | False | XLOC_000061 |
| TCONS_00000119 | mRNA | downstream | 144993 | 5422576 ~ 5426706 (+) | True | XLOC_000061 |
| TCONS_00000122 | mRNA | downstream | 208216 | 5485799 ~ 5504130 (+) | False | XLOC_000062 |
| TCONS_00000124 | mRNA | downstream | 298568 | 5576151 ~ 5587575 (+) | True | XLOC_000063 |
| TCONS_00000111 | other | upstream | 1513447 | 3759924 ~ 3760034 (+) | True | XLOC_000054 |
| TCONS_00000104 | other | upstream | 2831798 | 2301972 ~ 2441683 (+) | False | XLOC_000050 |
| TCONS_00000108 | other | upstream | 2870257 | 2403103 ~ 2403224 (+) | True | XLOC_000051 |
| TCONS_00000102 | other | upstream | 2970858 | 2301958 ~ 2302623 (+) | False | XLOC_000050 |
| TCONS_00000100 | other | upstream | 2973935 | 2286849 ~ 2299546 (+) | False | XLOC_000048 |
| TCONS_00000117 | other | downstream | 124951 | 5402534 ~ 5418507 (+) | True | XLOC_000060 |
| TCONS_00000120 | other | downstream | 159807 | 5437390 ~ 5487162 (+) | False | XLOC_000062 |
| TCONS_00000121 | other | downstream | 161160 | 5438743 ~ 5450444 (+) | False | XLOC_000062 |
| TCONS_00000123 | other | downstream | 219702 | 5497285 ~ 5502084 (+) | True | XLOC_000062 |
| TCONS_00000134 | other | downstream | 904759 | 6182342 ~ 6185532 (+) | False | XLOC_000067 |
| species | RNA id | representative | length | rna type | GC content | exon number | chromosome id | location |
|---|---|---|---|---|---|---|---|---|
| grasscarp (Ctenopharyngodon idella) | CI01000299_02612562_02613926.mRNA | True | 2021 | mRNA | 0.48 | 2 | CI01000299 | 2612499 ~ 2614792 (+) |
