RNA id: CI01000012_08307719_08308987.mRNA



Basic Information


Item Value
RNA id CI01000012_08307719_08308987.mRNA
length 404
RNA type mRNA
GC content 0.48
exon number 2
gene id CI01000012_08307719_08308987
representative True

Chromosome Information


Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 8307719 ~ 8309221 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


TGTCTCCTGAGGCTTTGGGGTTCCTGTCTGGCATTGGCGTGTTCATCTTTCTTGTGATTGTACTCTTTCTTTACCTCAATAACAAACTGTCCCTTGAGAGTGCCAACCAACTGCCCAGCCTCGACCAGTACAGGAAGAGCACAGAAGCAGCAGACACGGTGACGTGCTGAACTGGTCGGCTTGTGATCCTCAGCACAGGACGTTGATTGGAGAGGACAGATGCCACTGGCCAATTATTAGATCAATTGTGTGTGTGTGTGCGTGTGTGTGTGTGTGTGTGTGTGTGTCTGAAAATGAATGAAGGGGATCATGTAACAGCCCTGAGAGAAAATCTGGGCAGAAATCCAAACACACAGGATCAAATGTCCACATTGTCAGTCTACATGCACACACACACTCACACA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU83904 lncRNA upstream 30136 8277395 ~ 8277583 (+) True G73571
TU83870 lncRNA upstream 104552 8202862 ~ 8203167 (+) True G73537
TU83847 lncRNA upstream 154530 8152928 ~ 8153189 (+) True G73522
TU83832 lncRNA upstream 173500 8134012 ~ 8134219 (+) True G73507
TU83818 lncRNA upstream 186513 8120969 ~ 8121206 (+) True G73493
TU83708 lncRNA downstream 46845 8356066 ~ 8357504 (+) True CI01000012_08353036_08355661
TU83909 lncRNA downstream 56382 8365603 ~ 8365925 (+) True G73576
TU83915 lncRNA downstream 59401 8368622 ~ 8369011 (+) True G73579
TU83920 lncRNA downstream 64806 8374027 ~ 8374232 (+) True G73583
TU83922 lncRNA downstream 77066 8386287 ~ 8391810 (+) True G73585
CI01000012_08264407_08270366.mRNA mRNA upstream 36891 8264002 ~ 8270828 (+) True CI01000012_08264407_08270366
CI01000012_08234924_08239665.mRNA mRNA upstream 67834 8234759 ~ 8239885 (+) True CI01000012_08234924_08239665
CI01000012_08159919_08162280.mRNA mRNA upstream 145383 8159607 ~ 8162336 (+) True CI01000012_08159919_08162280
CI01000012_07847662_07849170.mRNA mRNA upstream 457985 7846544 ~ 7849734 (+) True CI01000012_07847662_07849170
CI01000012_07822979_07844745.mRNA mRNA upstream 462159 7822410 ~ 7845560 (+) True CI01000012_07822979_07844745
CI01000012_08312903_08334243.mRNA mRNA downstream 3682 8312903 ~ 8334856 (+) True CI01000012_08312903_08334243
CI01000012_08353036_08355661.mRNA mRNA downstream 41608 8350829 ~ 8357415 (+) False CI01000012_08353036_08355661
CI01000012_08433577_08437269.mRNA mRNA downstream 124356 8433577 ~ 8437972 (+) True CI01000012_08433577_08437269
CI01000012_08464015_08470633.mRNA mRNA downstream 154794 8464015 ~ 8470764 (+) True CI01000012_08464015_08470633
CI01000012_08479030_08480715.mRNA mRNA downstream 167895 8477116 ~ 8481200 (+) True CI01000012_08479030_08480715
TU83614 other upstream 499864 7806103 ~ 7807855 (+) True CI01000012_07806089_07811902
TU81687 other upstream 2383414 5923166 ~ 5924305 (+) True CI01000012_05923216_05928055
TU81634 other upstream 2491114 5813517 ~ 5816605 (+) False G71623
TU81545 other upstream 2746286 5550493 ~ 5561433 (+) False G71548
TU81201 other upstream 2767263 5538525 ~ 5540456 (+) True G71221
TU83914 other downstream 57585 8366806 ~ 8367627 (+) False G73578
TU83912 other downstream 57783 8367004 ~ 8367627 (+) False G73578
TU83911 other downstream 57856 8367077 ~ 8367627 (+) True G73578
TU85876 other downstream 1912734 10221955 ~ 10222037 (+) True G75291
TU86153 other downstream 2835596 11144817 ~ 11145739 (+) True G75533

Expression Profile